Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 146 / 3e-43 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 130 / 7e-37 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT5G03380 87 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G24580 82 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G60800 79 / 9e-18 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G36950 75 / 8e-16 Heavy metal transport/detoxification superfamily protein (.1) AT1G29000 72 / 3e-15 Heavy metal transport/detoxification superfamily protein (.1) AT2G28090 71 / 8e-15 Heavy metal transport/detoxification superfamily protein (.1) AT3G05220 67 / 6e-13 Heavy metal transport/detoxification superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006600 [exp] 147 / 9e-44 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 144 / 4e-42 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 139 / 8e-41 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 135 / 8e-39 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.016G093100 [exp] 96 / 1e-23 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G007600 [exp] 94 / 9e-23 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.012G007300 [exp] 91 / 4e-22 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.006G124800 [exp] 89 / 7e-21 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G214700 [exp] 87 / 2e-20 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015762 [exp] 149 / 5e-45 AT3G02960 151 / 3e-45 Heavy metal transport/detoxification superfamily protein (.1) Lus10037044 [exp] 136 / 5e-40 AT3G02960 137 / 6e-40 Heavy metal transport/detoxification superfamily protein (.1) Lus10038785 [exp] 131 / 8e-38 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 130 / 2e-37 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10012867 [exp] 122 / 4e-32 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10030514 [exp] 101 / 2e-25 AT5G50740 221 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10022617 [exp] 90 / 5e-21 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10021516 [exp] 89 / 1e-20 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032923 [exp] 87 / 1e-20 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10015583 [exp] 87 / 2e-20 AT5G24580 314 / 6e-107 Heavy metal transport/detoxification superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.016G017600.2 pacid=42810303 polypeptide=Potri.016G017600.2.p locus=Potri.016G017600 ID=Potri.016G017600.2.v4.1 annot-version=v4.1 ATGCATTGCCAAGGATGTGCTGATAAAATCTTACATATCCTGAAAGGATTTGAAGGTGTGGAAGAAGTTAAGATGGATAGCAAACAGAACAAGGTAATGG TGAAGGGACCGAAGGCTGATCCATCGAAAGTTTTGGAGAGACTTCAAGGAAAATACAGTAGAAATGTTGAACTCATATCTCCAAAACTAAAACCCAGTGC TCAAGATAAAAAAGAGCCAGAAAAAAAACAAGTGCCTCAAGTAAAGATAGTGGTGCTGAAAATGAATATGCATTGTGAAGGTTGTGCTCATGGCATCAAG AAAAAAGTATTGAGAATGGAAGGAGTTTCAAGTGTGGAGCCAGATATGAAGAATTCTCAAGTGACTGTCAGGGGAGCTTTCGATCCACCAAAACTTGCCC AGAAAATTATGGAAAAGCTGGGGATTCATGTTGAGATACTAAAGCAACAGAACCAGGCAGCACCGAAGGATAAAAATAACAATAACAGCAACAATAATAA GAATATGTTTCACTATCCTCCTCAAAATTCCCAAGAATATATTTATCCTTGTCCAATATTCAGTGATGAAAATGTTTTTTCATGTTCAATAATGTAA
AA sequence Show only first row Show all	>Potri.016G017600.2 pacid=42810303 polypeptide=Potri.016G017600.2.p locus=Potri.016G017600 ID=Potri.016G017600.2.v4.1 annot-version=v4.1 MHCQGCADKILHILKGFEGVEEVKMDSKQNKVMVKGPKADPSKVLERLQGKYSRNVELISPKLKPSAQDKKEPEKKQVPQVKIVVLKMNMHCEGCAHGIK KKVLRMEGVSSVEPDMKNSQVTVRGAFDPPKLAQKIMEKLGIHVEILKQQNQAAPKDKNNNNSNNNKNMFHYPPQNSQEYIYPCPIFSDENVFSCSIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02960			Heavy metal transport/detoxifi...		Potri.016G017600 [exp]	0	1
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G055600 [exp]	25.69	0.9179
AT2G24370			Protein kinase protein with ad...		Potri.018G002400 [exp]	84.74	0.9934
					Potri.001G169351 [exp]	91.53	0.9934
					Potri.001G196900 [exp]	93.38	0.9934
					Potri.001G276804 [exp]	95.19	0.9934
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G298000 [exp]	96.09	0.9934
					Potri.001G330250 [exp]	96.97	0.9934
AT3G28007		SWEET4, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G344300 [exp]	97.85	0.9934
AT1G52900			Toll-Interleukin-Resistance (T...		Potri.001G403800 [exp]	100.44	0.9934
AT1G55790			Domain of unknown function (DU...		Potri.001G438200 [exp]	102.96	0.9934

Compare expression of checked genes

Potri.016G017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.