Plant FIBer expression Database

Potri.016G017900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G006300
[exp]
221 / 5e-72 AT4G39720 49 / 2e-06 VQ motif-containing protein (.1)
Potri.003G075800
[exp]
55 / 8e-09 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1)
Potri.001G158800
[exp]
49 / 5e-07 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05678 VQ VQ motif
Representative CDS sequence
>Potri.016G017900.1 pacid=42809269 polypeptide=Potri.016G017900.1.p locus=Potri.016G017900 ID=Potri.016G017900.1.v4.1 annot-version=v4.1
ATGAGCAAAATTATGTCCGATAATCCTCCCGATTGGTCTCAATTCTATCAACAAAATCTCTCGAACCAAGTTCTAACTCCTATTCGACCCATGTTCAACG
ATCGTGGTGTCGCTGATGTGAATATCATCACCAGCACCACCATGGACACGGCTAGCATATCGAACCCAATGGGTTCGGCCAATCCTAGCTCAAGTGGTCA
TTTGAGCCCTGAAGGTCGAGTTGCCAAGCCTATTCGTAGAAGGTCTAGGGCTTCAAGAAGAACCCCGACAACATTACTCAATACAGACACCACGAATTTC
CGAGCCATGGTGCAACAATTCACTGGGGGTCCTAGTGCACCATTTGCAACAGGATCACAAATTAATGCCACAAATTTTGGTTATGCAGTAGGTGTTCATC
GTCAAGGCCATCATGGTAATCACCCCAGTCCAGTTATGATGCCCCCGGGGTATCATTTGCAATATCAGCAGCAGCAGCAGCAGCAGCAGCAATTTCAGCA
GCAAAGCCAGCCACCACCATCATACATGTTCTCACTGAGAAACAGTAATATGGGTACTAATACTAGTACTACCACAGCTCCTGGTGATGTGTTTTTTCAA
AGACTTGGAAACCCTAGAGCCGCTACAACCATGGAAGTCTCTGATCATGGGTACTCAACTGAAGGAGCTGTAATTTCCTCCCTGGTGGCTCCTCCTTCTA
GGCCTCCATCTTCCAGCTCCAATGAGAACAGAAGTAATACTTTCTTATTCTGA
AA sequence
>Potri.016G017900.1 pacid=42809269 polypeptide=Potri.016G017900.1.p locus=Potri.016G017900 ID=Potri.016G017900.1.v4.1 annot-version=v4.1
MSKIMSDNPPDWSQFYQQNLSNQVLTPIRPMFNDRGVADVNIITSTTMDTASISNPMGSANPSSSGHLSPEGRVAKPIRRRSRASRRTPTTLLNTDTTNF
RAMVQQFTGGPSAPFATGSQINATNFGYAVGVHRQGHHGNHPSPVMMPPGYHLQYQQQQQQQQQFQQQSQPPPSYMFSLRNSNMGTNTSTTTAPGDVFFQ
RLGNPRAATTMEVSDHGYSTEGAVISSLVAPPSRPPSSSSNENRSNTFLF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G15120 VQ motif-containing protein (.... Potri.016G017900
[exp]
0 1
AT3G20770 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylen... Potri.009G159200
[exp]
2.23 0.8841 EIN3A,EIN3.2
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Potri.001G270600
[exp]
4.00 0.8745
AT5G40780 LHT1, LTH1 lysine histidine transporter 1... Potri.001G335300
[exp]
10.53 0.8427 Pt-LHT1.2
AT4G31170 Protein kinase superfamily pro... Potri.006G280000
[exp]
12.16 0.8368
AT1G66930 Protein kinase superfamily pro... Potri.017G117400
[exp]
14.42 0.8274
AT4G28400 Protein phosphatase 2C family ... Potri.006G081400
[exp]
14.66 0.8364
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Potri.001G362300
[exp]
20.34 0.8259 Pt-MRP3.1
AT4G17900 PLATZ transcription factor fam... Potri.003G092800
[exp]
21.21 0.8348
AT3G51580 unknown protein Potri.019G058400
[exp]
24.08 0.8252
AT2G24360 Protein kinase superfamily pro... Potri.018G001800
[exp]
26.70 0.7834

Potri.016G017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.