Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22370 418 / 5e-143 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22400 410 / 1e-139 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 407 / 1e-138 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 406 / 2e-138 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22380 406 / 2e-138 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 397 / 1e-134 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G36970 224 / 1e-67 UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 219 / 5e-66 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G46670 218 / 9e-66 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59590 217 / 2e-65 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098400 [exp] 475 / 2e-165 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021100 [exp] 468 / 2e-162 AT1G22360 505 / 5e-177 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021000 [exp] 464 / 5e-161 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 459 / 4e-159 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 458 / 1e-158 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G020900 [exp] 457 / 1e-158 AT1G22380 538 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.006G023151 [exp] 457 / 3e-158 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G312600 [exp] 456 / 4e-158 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021600 [exp] 454 / 4e-158 AT1G22370 473 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031388 [exp] 414 / 4e-141 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 410 / 5e-140 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 406 / 3e-138 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 397 / 6e-135 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 397 / 1e-134 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10032218 [exp] 395 / 6e-134 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10007421 [exp] 394 / 3e-133 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10019364 [exp] 388 / 3e-131 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 379 / 8e-128 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 378 / 2e-127 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G018001.1 pacid=42810200 polypeptide=Potri.016G018001.1.p locus=Potri.016G018001 ID=Potri.016G018001.1.v4.1 annot-version=v4.1 ATGGCTGAAGTTATCAAGCCTCATGTGGTGTGTATCCCATTCCCATTGCAAGGGCACATAAACCCTATGCTCAAAATAGCAAAGCTCCTTCACCATAAAG GTTTTCATGTAACCTTTGTCAACACAGAATTTAACCACAAAGGAATACTTGATGCCAGAGGCCCTAATGCTCTTGATGGACTGCCTGACTTCTGTTTTGA GACTTTACCAATCGAGCACCCTCCTTCAAATTCCCACATAAGTGCCACCCTAAACCTTCTTGTCCTTCGACAGGCATGTGGAAAGAGCCTTTTGTCTCCC TTGAGAGACCTCATTGCTAGACTCAATGACACTGTTGCAAATCCTCCTGTGACATGCATGGTGTCTGATGCTATGTTGACGTACACTCAAGTACTCACTG AAGAACTTGAAATGCCGAATGTGTTTGTTTGGCATATGGCTGCGACTGGGGTTGTGAGCTTTGCACATTTTCGTGATCAAATGAAGCAACTGGTCACTCT TCTCAAAGAACCAAGCCAAAAAACTGATGACATGTTGGACAAAAAGTTGGAATGGATTCCAGGAACGAAAAGTGCACGAATGAGAGATCTTCTTAGGGTT ATCCGAGTTCAAGATCGAAATGGATTCATGGAAGATAGTAGCGAGGGCGATATGGAAAGGGTTTCCAAGGCATCGGCAGTTATTTTCAATACCTATGATA GCTTGGAGGGTGAAGACTTGAACAGCCTCTCGTCTGTTTTTGGTCGAGTTTATAGCATTGGTCCTACTCAAATGCTTTTGAATCACATCTCTGATGATTT TTATGAGTCTGTTGATGGAAATCTATGGAATGCTGAGCCTGAATGCATTAAATGGCTTGATTCGAAGGAGCCGGGTTCGGTGATTTATGTAAGTTTTGGT AGCTCGACAATAACAACAGCAGAGGAGCTAGTTGAGCTTGCTTGGGGACTTGCTGATAGCAAGCACAACTTCTTGTGGATAATTAGGCCAGATTTGATTA AAGGAGACTCGGCAATTCTACCACAGGACTTTCTTTTCGAAACTAAAGAGAAAGGTTTTGTAGCAAGTTGGTGCCCACAAGAGCAAGTCCTTAACCATCC ATCAATAGGAGGATTCCTAACACATTGTGGGTGGAACTCAATGATAGAAAGCATATCTGCCGGGGTGCCGATGATTTGTTGGCCATTCTTTGGGGACCAA TTTGCAAACTCAAGAAAGAGTTGCAACGAATGGGGAATTGGCTTGGAGCTGAGAGATGGATTCAAAAGAGAAGAAGTGGAGAACATTGTTAACGAGATAT TGATAGGTGAAAAGGGTAAGAAAGTGAAGGAAAAGGGTCTTGGAATGGAAGAAAATGGCAGAAGAGGCCACAGGTTTTGA
AA sequence Show only first row Show all	>Potri.016G018001.1 pacid=42810200 polypeptide=Potri.016G018001.1.p locus=Potri.016G018001 ID=Potri.016G018001.1.v4.1 annot-version=v4.1 MAEVIKPHVVCIPFPLQGHINPMLKIAKLLHHKGFHVTFVNTEFNHKGILDARGPNALDGLPDFCFETLPIEHPPSNSHISATLNLLVLRQACGKSLLSP LRDLIARLNDTVANPPVTCMVSDAMLTYTQVLTEELEMPNVFVWHMAATGVVSFAHFRDQMKQLVTLLKEPSQKTDDMLDKKLEWIPGTKSARMRDLLRV IRVQDRNGFMEDSSEGDMERVSKASAVIFNTYDSLEGEDLNSLSSVFGRVYSIGPTQMLLNHISDDFYESVDGNLWNAEPECIKWLDSKEPGSVIYVSFG SSTITTAEELVELAWGLADSKHNFLWIIRPDLIKGDSAILPQDFLFETKEKGFVASWCPQEQVLNHPSIGGFLTHCGWNSMIESISAGVPMICWPFFGDQ FANSRKSCNEWGIGLELRDGFKREEVENIVNEILIGEKGKKVKEKGLGMEENGRRGHRF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.016G018001 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076100 [exp]	5.74	0.9950
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076000 [exp]	8.24	0.9948
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131300 [exp]	9.79	0.9945
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075900 [exp]	11.83	0.9945
AT4G14746			unknown protein		Potri.001G176800 [exp]	15.62	0.9845
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212923 [exp]	15.68	0.9940
AT1G59740			Major facilitator superfamily ...		Potri.005G001400 [exp]	17.66	0.9936
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.005G254300 [exp]	18.00	0.9934
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.012G115000 [exp]	18.89	0.9937	CYP728F1
					Potri.014G081900 [exp]	20.78	0.9936

Compare expression of checked genes

Potri.016G018001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.