Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32250 793 / 0 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT4G15090 694 / 0 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 669 / 0 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 577 / 0 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G19990 522 / 4e-174 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT4G38180 379 / 4e-119 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 347 / 2e-106 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT1G52520 330 / 1e-101 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT5G18960 309 / 1e-92 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G06250 308 / 1e-92 FAR1_related FRS7 FAR1-related sequence 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G110300 [exp] 771 / 0 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.016G018300 [exp] 754 / 0 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.006G020700 [exp] 753 / 0 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.006G020600 [exp] 711 / 0 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.003G207100 [exp] 627 / 0 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2) Potri.004G209000 [exp] 406 / 3e-129 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 396 / 1e-125 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 393 / 4e-124 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.003G031400 [exp] 361 / 2e-113 AT1G52520 931 / 0.0 FAR1-related sequence 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 449 / 6e-149 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10034360 [exp] 52 / 4e-06 AT3G02260 5990 / 0.0 UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1) Lus10023137 [exp] 44 / 9e-05 AT5G18960 46 / 3e-06 FAR1-related sequence 12 (.1) Lus10026854 [exp] 45 / 0.0002 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026732 [exp] 43 / 0.0002 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.016G018100.10 pacid=42810110 polypeptide=Potri.016G018100.10.p locus=Potri.016G018100 ID=Potri.016G018100.10.v4.1 annot-version=v4.1 ATGGAGATAGATCTTGAACTGCCTTCGAGTGATCAGGAGAAATTAGAGTCTGGAGCGAACACAAATGAGTGTATCATGGATAGCGCAAGTGAATTGCGTG GTATTGATGAGGCTGCAAGTTCTTGTTTGGTTGAAGAGGTTGTTGAAGCGTGTGGGTTGAATGCAATTGAGGGTGTTATTGATGGTGGGGATAAGGTGGA GGAGAGGGGTGTGGGGGTTGATGGGGTTGGTGAAGGTGGGATCTCTGTGCCTCAGAATGGATTAAAATTTGAAACGAAGGAGGCAGCATATGCGTTCTAT AGAGATTATGCGCTCTCTGTGGGATTTGGGATCACTATAAAAGCTAGTCGTCGTTCAAAAAAGAATGGGAAATTTATTGATGTCAAAATTGCTTGTTCTA GATTTGGAAGCAAGCGGGAGTCAAGTGTGACTGTTAATCCACGATCATGTACAAAGACAGATTGCAAGGCAGGAATGCACATGAAGAGGACAGAAGATGA GAAATGGGTTATATATGGTTTTGTAAAGGAGCATAACCATGAGATTTGTAAGGAAGATTATGATAATGCTACAGGGAGACGAAACAAGCAATCAGGTGCA GTTGCTCGTCCGAAGAAAGGTTTGCAGTTGGCTTTAGATGAGGATGATGTAAAAGTTATGCTCGAGTATTTTATGTGCATGCAGGCTGAGAATTCGACCT TCTTTTATGCAATAGATCTGGACCATGAAAAACGTATGAGAAATGTGTTCTGGATTGATGCAAAAGGCAGACATGATTATCATAGTTTCTGTGATGTTGT CTTCTTTGATACCTTTTATGTTAGCAGCAAATATAAGCTTCCTTTCGTTCCTATTATTGGAGTGAATAATCACTTCCAGTTCGTGTTACTTGGATGTGCA TTGATTGGGGAGCACTCTGCATCTAGTTTTCTCTGGCTAATGCACACATGGCTCAAAGCAGTGGGTGGCCAAGCTCCAAAAGTAATTATTACTGATCAAG AAAGATTCCTGAATGAAGCTGTTGTGGATGTATTTCCTGACACACTCCACTACTATAGTTTATGGCATGTATTCAGTAAGATTCCTGAAAACTTGTCTCC TGTTATGAATCAAAGTGAAATTTTTATGTTGAAATTCAACAAATGTATTTATCAGTCTCAGACAGATGAGCAGTTTGAAAAGAGATGGTGGAAGATGGTT GATAGATTTGAACTAAGGGAGGATGAATGGGTTCACTCATTGTATGAAAATCGTATAAAGTGGGTCCCAACTTTTATACGAGATATATCTTTAGCTGGAA TGTCCACAACTGAGCGATCTGGAAGCGTTGCCTCTTTTTTTGACAAGTACATTCACAGGGAAGCTGTATTCAAGGAGTTTATGGAGCAATATAAAGCATT TTTGGAGGACGGGTATGAGATGGAAGCCAAAGCTGAATTTGAAACACAAAACAAACAGCCTGCATTAAGGTCTCTCTCATCTTTTGAGAAACAAGCATCG ACATTATATACAGATGCCATTTTCAAGAAATTCCAGGTTGAGGTTTTGGGAGTAGTTTCATGTCACCTGAAAAAGGAAAGTGAAGATGAGGCAACTATTA ACTTTCGAGTTGATGATTTTGAAGAACGTCAGAATTTTCTTGTATCTTGGAACAAATCAACAATGGATATTTGTTGTATATGTCGTTCTTTTGAATACAG AGGTTTCTTGTGTAAACACGCAATCCTTGTTCTTCAAATGTCTGGTGTTTCCAACATACCATCCCGCTACATATTGAAGCGTTGGACAAAAGGTGCCAAG ATTAATCAAGCTGTTGATAAGGTATCAAAAAGTCTTCATTATAGGGTACAACGTTTCAATGATTTATGTAAACAAGCCATCAAACTGGGCAAAGAGGGTT CTTTATCTAAAGAAGCTTATGATATTGCTGTTCGGACATTAGAGGAAGTCTTAGAAAATTGTGTAGGTCTAAATAACTCTGTTAAGAGTGTCTTAGAGCC TAACACCTTGGATGTTCTTGGTTTTCCTGGCTTTGAAGAAGAGAACTGTGATAACTGTTTCGCCAAGTCATCAAAGAAAAAGAGAACTTACAAGAAAAAA AAGGTATACTCTGAGGCTGGGGGAATAAAAATTGGTTTGCAAGAAAGCTACCAGCAGATGGACCAGATTAACTCTAGGGCACACCATACTGATAACTGCT ACATTCCTCAACAGGACACGCAAGAGGTGGAATTAGGGTCTAGGGCACCAAATCTTGAAGGCTATTATGGCTCTCAAGAAGGCGCGCCGGGAGTGGGACA GCTGAACTCAATTTCTCCATTCCGTGATGGTTATTATAGCAATCAACAGGGCTTACCAGTCCTGGGACAGTTGCATTTGATACCAACACATGTTAGTCAC TTTGGAGCCCCACTGAGCATGCAGGGACTGGGTCAGTTGGGCTTCAGAGCACCAACCATGCAAACTTCTTTCAGTAACTTGCCAGATTTGGAACAGCCTG TCAGTTCTACGCAATTTAATGGCATCGCAACAAAGCATCTACATGACAAGCACCTCTCCAGTTAA
AA sequence Show only first row Show all	>Potri.016G018100.10 pacid=42810110 polypeptide=Potri.016G018100.10.p locus=Potri.016G018100 ID=Potri.016G018100.10.v4.1 annot-version=v4.1 MEIDLELPSSDQEKLESGANTNECIMDSASELRGIDEAASSCLVEEVVEACGLNAIEGVIDGGDKVEERGVGVDGVGEGGISVPQNGLKFETKEAAYAFY RDYALSVGFGITIKASRRSKKNGKFIDVKIACSRFGSKRESSVTVNPRSCTKTDCKAGMHMKRTEDEKWVIYGFVKEHNHEICKEDYDNATGRRNKQSGA VARPKKGLQLALDEDDVKVMLEYFMCMQAENSTFFYAIDLDHEKRMRNVFWIDAKGRHDYHSFCDVVFFDTFYVSSKYKLPFVPIIGVNNHFQFVLLGCA LIGEHSASSFLWLMHTWLKAVGGQAPKVIITDQERFLNEAVVDVFPDTLHYYSLWHVFSKIPENLSPVMNQSEIFMLKFNKCIYQSQTDEQFEKRWWKMV DRFELREDEWVHSLYENRIKWVPTFIRDISLAGMSTTERSGSVASFFDKYIHREAVFKEFMEQYKAFLEDGYEMEAKAEFETQNKQPALRSLSSFEKQAS TLYTDAIFKKFQVEVLGVVSCHLKKESEDEATINFRVDDFEERQNFLVSWNKSTMDICCICRSFEYRGFLCKHAILVLQMSGVSNIPSRYILKRWTKGAK INQAVDKVSKSLHYRVQRFNDLCKQAIKLGKEGSLSKEAYDIAVRTLEEVLENCVGLNNSVKSVLEPNTLDVLGFPGFEEENCDNCFAKSSKKKRTYKKK KVYSEAGGIKIGLQESYQQMDQINSRAHHTDNCYIPQQDTQEVELGSRAPNLEGYYGSQEGAPGVGQLNSISPFRDGYYSNQQGLPVLGQLHLIPTHVSH FGAPLSMQGLGQLGFRAPTMQTSFSNLPDLEQPVSSTQFNGIATKHLHDKHLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32250	FAR1_related	FRS2	FAR1-related sequence 2 (.1.2....		Potri.016G018100 [exp]	0	1
AT1G15910		FDM1	factor of DNA methylation 1, X...		Potri.003G181000 [exp]	6.92	0.6669
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138500 [exp]	14.24	0.6933
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	14.31	0.6373
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	14.69	0.6761	CYP71.3
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.014G018000 [exp]	18.33	0.6229
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.016G095750 [exp]	18.54	0.6412
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.006G106500 [exp]	22.22	0.5980
AT1G21920			Histone H3 K4-specific methylt...		Potri.002G085900 [exp]	27.54	0.5747
AT1G77460			Armadillo/beta-catenin-like re...		Potri.005G180100 [exp]	34.98	0.6191
AT1G28050	CO	COL15	B-box type zinc finger protein...		Potri.003G166000 [exp]	36.87	0.5543

Compare expression of checked genes

Potri.016G018100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.