Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15080 801 / 0 DHHC-type zinc finger family protein (.1) AT3G22180 726 / 0 DHHC-type zinc finger family protein (.1) AT2G33640 394 / 1e-128 DHHC-type zinc finger family protein (.1) AT1G69420 286 / 4e-87 DHHC-type zinc finger family protein (.1.2) AT4G01730 159 / 9e-42 DHHC-type zinc finger family protein (.1) AT5G04270 71 / 2e-13 DHHC-type zinc finger family protein (.1) AT3G09320 69 / 2e-12 DHHC-type zinc finger family protein (.1) AT3G26935 68 / 1e-11 DHHC-type zinc finger family protein (.1) AT4G24630 66 / 3e-11 DHHC-type zinc finger family protein (.1) AT5G41060 63 / 3e-10 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G020800 [exp] 1098 / 0 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 474 / 1e-158 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 338 / 6e-111 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 303 / 2e-93 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 301 / 3e-92 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.014G112000 [exp] 217 / 2e-62 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 169 / 6e-45 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254432 [exp] 111 / 4e-26 AT2G33640 136 / 2e-35 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 70 / 3e-12 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039043 [exp] 861 / 0 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 845 / 0 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016036 [exp] 454 / 5e-151 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 306 / 3e-95 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10037133 [exp] 288 / 7e-89 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 288 / 2e-87 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 239 / 1e-70 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 231 / 2e-67 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10038029 [exp] 228 / 3e-66 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 155 / 1e-40 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.016G018400.2 pacid=42809598 polypeptide=Potri.016G018400.2.p locus=Potri.016G018400 ID=Potri.016G018400.2.v4.1 annot-version=v4.1 ATGGTGAGGAAACATGGATGGCAATTACCAGCTCACACCTTTCAGGTTGTTGCAATCACTGTCTTCTGCTTATTGGTGATTGCATTTTATGCTTTCCTTG CTCCTTTCCTTGGAGGCAAAATCTGGGAGTATGTGCTTATCGGGACTTACACTCCAGTGGTGCTTCTTGTCTTTATTCTATATGTTCGGAGTACTGCAAT TAACCCTGCAGATCCCGGCATTATGTCTAAATTCAATTCCGATGATGTAGCAAATAAACTCAATGTGAAACATGGGATGTCATTGAAGGATCTGCCTAGG AAATTTGATGAAACTGGAAGTGCAATGCATTCGTCTTTTTCTTCACCTTCCAGAAGTTCTATAGCTCCAGCAAACTCTAGTAAGAAAGGGTCAGTGGGAG AAATTGAGAGAGCAGAGACTGCAGGGCAACCTCCATCCAGAAAATCTTCTCATAATATTGGTTTAATCTTCTGTGCACTGTTTGTTCATGAAGATTGCCG CAAACAGGAAGGGATAGCTGAGCAACAGAGCAATGGTGAAGATGCTTTGTTCTGTACATTGTGCAATGCTGAGGTACGCAAGTTTAGCAAACACTGTCGA AGTTGTGATAAATGTGTAGATGGTTTTGATCACCATTGCCGGTGGCTCAACAATTGCGTGGGGTACAAAAACTATGTGACTTTTGTTTCTCTAATGGCTA TTAGTCTTGTTTGGCTTGTACTTGAAGCTGGAGTTGGTATTGCTGTCTTTGTACGTTGTTTTGTTAACAAGCAAAGCATGAAGGTTGAAATTGTCGATAC ACTTGGAAATGGTTTCTCTATAGCTCCTTTTGCAACAGTTGTGGCTGTATGTACTGTAGTTTCAATCCTAGCATGTGTACCTCTGGGTGAACTTTTCTTT TTCCACATGATATTGATCAGAAAGGGTATTACCACCTATGAGTATGTTGTGGCCTTGAGAGCAATGAGCGAGGCACCTGCTGGAGCATCTGTGGACGAGG AATTGCCGAACATACTGTACTCTCCATCAGGATCTGCCACAACTGGCTTCAGTGGTGGAAGTTCTCTTGGCCTACAGTACAAGGGAGCATGGTGTACCCC TCCTAGGGTATTTGTGGATTATCAGGAAGAAGTTGTACCTCACCTGGACCCTGGGATGGTTCCATCAACTGTCGATCCAGATGCTGCTGGAGCTCAAGAA AGAGGTAACAAGGTACCCAAACGGCCGGTTCGAATTAGTGCTTGGAAACTTGCAAAGTTAGATTCCGCTGAGGCTATGAGAGCAGCAGCAAAGGCCAGGG CATCTTCCTCTGTTCTAAAGCCAGTTGATAATCACCGTTTACCAGATACTGAATATAGCTCCAGTGGTAATATGAGTGTCAGAAGTAGTGTGAGCACTGA TATGGGGACAAACAAAGAGATCAAGAATGAGCTGAGATTAAATGCACTAGGAAACTCTTTTGCTCCAGGTCAAGGAAGCCTGGATGAGTATGAAATTGGG ACTCAAAGTATTAGTAGCTTCAGCAGCCCAAGCCATGTTCATGAATCAGTCACGCTTAGTCCTCTACCACAAACTCACAGTCTAGGTCGTTTCAAGGCAG CAACCTCAGCCCCTGGCCTTATTCCTGATCATCATGTAACCTCTAAGGCTCCTTTACCTACTGCCAACAACCTGTTATCCTATCCTACGTCAGGATTTGA TGAAAAAATCATGCAGAAGGGAAGTAATACTGATCCATTGCTTCTTTCAGCTCCAGCTACTTCTCTTCTTAGAGATGTCAAAAGGACATCTGTTGTTTGG GACCAAGAGGCTGGAAGGTATGTATCAGTTCCTGTATCAGCTTCTGAAGCACGCAACAGAACAGCTATGCAAACAGTATTGCCAAAATCCAATCCAGAAA CAAGCAATGATGGTAGAAAGCAAGTAGTGCCACCACAACAGTTTTCATCATCCACAGCTAAAGCTCCTGCACATCCAGCTGAGAAGCTGATGTACACAGG GGACTCCATTTTCTTTGGTGGTCCACTTTTGAGTGTCCCTGTTAGGGATGGTTCGAGAAACGAGGGCAGCTTAGGTTTGAGAGAGGGCCAACAGCGGCTT GCTTTGAATTTACCTCGTGAATCTAGATTCAAAAGAGATTCAGTATCAAACCAGCTTCCAGTGTTTGCCCCTGGGGTTTTTGATAATAACCCTTCATCTG CCTCTGGTTTGAGGTAG
AA sequence Show only first row Show all	>Potri.016G018400.2 pacid=42809598 polypeptide=Potri.016G018400.2.p locus=Potri.016G018400 ID=Potri.016G018400.2.v4.1 annot-version=v4.1 MVRKHGWQLPAHTFQVVAITVFCLLVIAFYAFLAPFLGGKIWEYVLIGTYTPVVLLVFILYVRSTAINPADPGIMSKFNSDDVANKLNVKHGMSLKDLPR KFDETGSAMHSSFSSPSRSSIAPANSSKKGSVGEIERAETAGQPPSRKSSHNIGLIFCALFVHEDCRKQEGIAEQQSNGEDALFCTLCNAEVRKFSKHCR SCDKCVDGFDHHCRWLNNCVGYKNYVTFVSLMAISLVWLVLEAGVGIAVFVRCFVNKQSMKVEIVDTLGNGFSIAPFATVVAVCTVVSILACVPLGELFF FHMILIRKGITTYEYVVALRAMSEAPAGASVDEELPNILYSPSGSATTGFSGGSSLGLQYKGAWCTPPRVFVDYQEEVVPHLDPGMVPSTVDPDAAGAQE RGNKVPKRPVRISAWKLAKLDSAEAMRAAAKARASSSVLKPVDNHRLPDTEYSSSGNMSVRSSVSTDMGTNKEIKNELRLNALGNSFAPGQGSLDEYEIG TQSISSFSSPSHVHESVTLSPLPQTHSLGRFKAATSAPGLIPDHHVTSKAPLPTANNLLSYPTSGFDEKIMQKGSNTDPLLLSAPATSLLRDVKRTSVVW DQEAGRYVSVPVSASEARNRTAMQTVLPKSNPETSNDGRKQVVPPQQFSSSTAKAPAHPAEKLMYTGDSIFFGGPLLSVPVRDGSRNEGSLGLREGQQRL ALNLPRESRFKRDSVSNQLPVFAPGVFDNNPSSASGLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15080			DHHC-type zinc finger family p...		Potri.016G018400 [exp]	0	1
AT5G23520			smr (Small MutS Related) domai...		Potri.018G145524 [exp]	2.23	0.8413
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.016G025300 [exp]	2.82	0.8552
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Potri.005G131300 [exp]	4.00	0.8438
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	4.89	0.8677	Pt-FHY3.2
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.019G085400 [exp]	5.47	0.8280
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	7.34	0.8280
AT5G10290			leucine-rich repeat transmembr...		Potri.005G074200 [exp]	8.66	0.8447
AT1G27320		AHK3	histidine kinase 3 (.1)		Potri.003G171000 [exp]	10.24	0.8310	AHK3.2,PHK4
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	10.58	0.8184
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Potri.017G084600 [exp]	11.74	0.8077

Compare expression of checked genes

Potri.016G018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.