Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22200 826 / 0 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT1G80600 168 / 3e-46 WIN1 HOPW1-1-interacting 1 (.1) AT3G08860 155 / 2e-41 PYD4 PYRIMIDINE 4 (.1) AT2G38400 151 / 5e-40 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT4G39660 145 / 6e-38 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT5G46180 144 / 2e-37 DELTA-OAT ornithine-delta-aminotransferase (.1) AT5G63570 96 / 8e-21 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT3G48730 90 / 4e-19 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G57590 73 / 3e-13 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G020900 [exp] 1016 / 0 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.017G053500 [exp] 154 / 4e-41 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 152 / 2e-40 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.006G106800 [exp] 150 / 1e-39 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.007G085600 [exp] 149 / 2e-39 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.016G132200 [exp] 147 / 2e-38 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.005G095800 [exp] 142 / 7e-37 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.015G101100 [exp] 88 / 2e-18 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.005G082100 [exp] 74 / 8e-15 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003810 [exp] 755 / 0 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10010465 [exp] 754 / 0 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10025262 [exp] 162 / 5e-44 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10038510 [exp] 160 / 2e-43 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10023299 [exp] 160 / 2e-43 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10008025 [exp] 157 / 8e-42 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 153 / 6e-41 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10029922 [exp] 145 / 5e-38 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10004480 [exp] 143 / 4e-37 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10009086 [exp] 136 / 6e-35 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Potri.016G018500.1 pacid=42809329 polypeptide=Potri.016G018500.1.p locus=Potri.016G018500 ID=Potri.016G018500.1.v4.1 annot-version=v4.1 ATGGTTATCAGCAAACTCCTGCGATCCACTCTTAAAGCCCAGCTCGGTTCTTGCATAAAAAATGGCACTGCCTCTGGAAGTTCACAGGAGCATCTTCTCC GGGGCCCTTTCCTGGCCAGGTTATATGGTACCGAGGCATCTTTGCAAAAGGAAGATTCAACTACTGAGGGCAACAGTTTTAAGGGGCATGATATGCTGGC ACCTTTCACTGCTGGCTGGCAGAGTAATGATTTGGATCCCCTAGTCATAGAGAAGTCTGAGGGTAGTTATGTCTATGACATCAATGGGAAGAAGTATCTT GATGCTCTTGCTGGTCTTTGGTGCACATCCTTAGGGGGGAATGAACCACGGCTTGTGGCTGCTGCAACAGAACAGTTGAATAAATTGCCATTTTACCACT CCTTTTGGAATCGGACTACAAAACCTTCTTTGGATCTTGCAAAAGAACTTCTTGAAACTTTTACTGCAAGTAAAATGGCAAAAGCTTTCTTTACAAATAG TGGATCAGAAGCCAATGACACTCAGGTGAAGCTGGTTTGGTATTATAACAATGCTCTTGGAAGACCAAATAAGAAGAAATTTATAGCTCGAGCAAAATCG TACCATGGTTCAACCTTGATAACAGCCAGCCTTTCTGGCCTTCCAGCTTTGCACCAAAAATTTGATCTTCCTGCACCATTTGTACGACACACCGACTGCC CACATTACTGGCGTTATCATCTCCCAGGTGAGACAGAGGAGGAATTCTCAACCAGACTAGCTATCAATTTGGAGAATCTTATCCTGAAAGAGGGACCAGA GACGATTGCTGCATTTATTGCTGAGCCTGTCATGGGAGCAGGAGGCGTGATACCTCCACCAGCAACTTATTTTGATAAGATTCAAGCAGTGGTGAAAAAG TATGACATTCTTTTTATTGCAGACGAGGTAATTTGTGCATTTGGAAGGCTTGGGACAATGTATGGGTGCGACAAATTCAACATCAAACCAGACCTTGTAT CAGTAGCAAAGGCCCTTTCCTCTGGTTACTTGCCAATAGGAGCTGTTATGGTGAGCCCTGAAGTTTCAGATGTGATTGACTCACAAAGCAGCAAACTTGG TTCTTTCTCTCATGGATTCACTTACTCTGGTCACCCTGTAGCTTGTGCAGTTGCCATTGAAACGCTAAAGATATACAAGGAAAGAAACATTCTTGATCAA GTAAACAGAATCGCCCCAAAATTTCAAGACGGTGTAAAAGCCTTCTCTGACAGCCCTATCATAGGGGAGATACGAGGAACTGGCTTAATTCTTGGTACCG AGTTTGTAGACAACAAGTCACCAAATGATCCATTCCCTCCTGAGTGGGGAGTTGGCGCATATTTTGGAGCACAATGTGAGAAGGAAGGAATGTTGGTACG TGTCTCAGGGGACAACATAATGATGTCTCCACCATTTATCATGTCTCCTGAAGAGGTTGACGAGTTGATTAGCAAATATGGGAAAGCTCTGAAGGCTACT GAAGAGAGGGTAAAGGAATTGAAATCTCAGCAAAAGAAGCAGTAA
AA sequence Show only first row Show all	>Potri.016G018500.1 pacid=42809329 polypeptide=Potri.016G018500.1.p locus=Potri.016G018500 ID=Potri.016G018500.1.v4.1 annot-version=v4.1 MVISKLLRSTLKAQLGSCIKNGTASGSSQEHLLRGPFLARLYGTEASLQKEDSTTEGNSFKGHDMLAPFTAGWQSNDLDPLVIEKSEGSYVYDINGKKYL DALAGLWCTSLGGNEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLETFTASKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKS YHGSTLITASLSGLPALHQKFDLPAPFVRHTDCPHYWRYHLPGETEEEFSTRLAINLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKK YDILFIADEVICAFGRLGTMYGCDKFNIKPDLVSVAKALSSGYLPIGAVMVSPEVSDVIDSQSSKLGSFSHGFTYSGHPVACAVAIETLKIYKERNILDQ VNRIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFVDNKSPNDPFPPEWGVGAYFGAQCEKEGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT EERVKELKSQQKKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.016G018500 [exp]	0	1
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Potri.002G189900 [exp]	4.47	0.6629	ALDH2.1
AT3G03720		CAT4	cationic amino acid transporte...		Potri.019G039600 [exp]	8.77	0.7098
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.016G118000 [exp]	12.00	0.6659
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	27.20	0.6646
AT2G37110			PLAC8 family protein (.1)		Potri.016G087200 [exp]	35.29	0.6051
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.011G072100 [exp]	35.87	0.6240
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Potri.014G128600 [exp]	44.00	0.5937	ATMHX.1
AT5G22950		VPS24.1	SNF7 family protein (.1)		Potri.004G215500 [exp]	52.99	0.5872
					Potri.001G131500 [exp]	53.00	0.6126
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.001G302000 [exp]	56.86	0.5965

Compare expression of checked genes

Potri.016G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.