Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32240 830 / 0 unknown protein AT1G05320 135 / 4e-32 unknown protein AT1G68910 44 / 0.0006 WIT2 WPP domain-interacting protein 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021200 [exp] 1792 / 0 AT2G32240 838 / 0.0 unknown protein Potri.017G106400 [exp] 50 / 1e-05 AT5G11390 510 / 2e-172 WPP domain-interacting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010464 [exp] 1205 / 0 AT2G32240 840 / 0.0 unknown protein Lus10003812 [exp] 1198 / 0 AT2G32240 834 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G018700.1 pacid=42809723 polypeptide=Potri.016G018700.1.p locus=Potri.016G018700 ID=Potri.016G018700.1.v4.1 annot-version=v4.1 ATGGAAGGAGAGACTCAAGTCAGTTCAGATGTTCCAGTTGTGAAGGTTGACACTGATGTTGCTGATCCTATTAAGGTAACAAATGGAGACTTGCCGCAAG TAGAGAAGGAAGGAAAAAAAGAAGAGGATGAAACTGATGGAGAATTCATCAAAGTCGAGAAGGAATCGCTAGATGTGAAGGATGGCTCTCATACAGCTGA GGCGCAATCTGTTGTGGAGGCTGACAAGCCATCTGTTGTGGAAAGAAGTTTAAGTGGTTCGGCCAGAGAATTGCTGGAGGCGCAAGAGAAGATGAAGGAA CTTGAAATCGAATTGGAAAGAGTAGCGGCAGCATTAAAGCACTCTGAATCTGAGAATGCACAGATGAAGGATGAGGTCTTGCTTGTCAATGAGAAGTTGG ATGAAAGTGGAAAGAAGTATGAGGAGCTTGAAATCAGTCACAAGAAAGTGAAAGAGCAGATAATTGAAGCTGAGGAGAAATACAGTGCACAGCTCAACTC TTTGCAAGAAGCTCTACAAGCACAAGAAACCAAGCATAAGGAATTGGTTGAGGTCAAGGAATCATTTGATGGCATCACCCTTGAGCTCGAGAATTCGAGA AAGAAGATGAAAGAGTTGGAACATGAGCTGGAAGTATCTTCTGGTGAGACTAAGAAGTTTGAGGAGCTGCACAAAGAAAGTGGTTCACATGCTGAATCCG AAACGCAGAGGGCCTTGGAATTTGAAAGGCTGCTTGAGGCGGCAAAACAGAGTGCAAAAGAAATGGAAGATCAGATGGCTTCTCTTCAGGAGGAGGTCAA GGGCCTGTACGAGAAGGTTTCAGAGAATCAGAAAGTTGAAGAGGCACTTAAGAGCACTACAGCAGAACTTTCAGCAGCTAATGAAGAGTTGGCTGCTTCA AAATCACAGCTGCTGGAAATAGAGCAAAGACTTTCTTCAAAGGAGGCTCTTATCATCGAAATAACCCAGGAATTGGACCTCAAGAAAGCCTCTGAATCTC AGGTGAAGGAAGATGTTTCAGCTCTTGAGAATTTGCTCACTGCAACAAAAGAAGATCTTCAAGCAAAGGTTTCCGAGTTGGAAGGGATCAAGCTGAAGTT ACAGGAGGAAATCAACAAAAGGGAATCAGTTGAGGCTGGGTTAAAAACCCATGAAGCACAGGTCTCAACTGTACAGGAAGAATTGGCTAAAGTAATAAAA GAAAAGGAAGCTCTAGAAGCAGCCATGGCGGATCTCACTGGTAATGCAGCACAGATGAAAGAGTTGTGCAGTGAACTTGAGGAAAAGTTGAAAACTTCAG ATGATAATTTCTGCAAAGCAGATTCTCTTTTGTCCCAAGCTTTGTCAAACATTGCCGAGCTAGAACAGAAGCTGAAGTCTCTTGAAGATCTCCACAATGA ATCTGGAGCTGCTGCAGCAACTGCCTCTCAAAAGAACCTGGTGCTAGAGGATTTAATCCAAGCGTCAAATGAAGCAGCAGAAGAGGCCAAGTCACAACTG AGAGAGCTCGAGGCACGTTTTACTGCATCAGAGCAGAAGAATGTGGAGCTTGAGCAACAGTTGAATTTGGTTGAACTGAAAAGCAGTGATGCTGAGAGAG AGGTGAGGGAATTCTCAGAGAAAATATCTGAACTCAGTACTGCATTGAAAGAGGTAGAGGAAGAAAAGAAACAGTTGAGTAGCCAGATGGAGGAATACCA AGAAAAGATTAGCCACCTTGAATCTTCCCTGAATCATTCATCGTCTCGGAATTCAGAGCTTGAGGAAGAGTTGAGAATTGCAGAAGAAAAATGTGCTGAG CATGAGGACCGAGCAAATATGCACCACCAGCGCAGCCTTGAACTTGAAGATTCATTCCAGACATCTCATTCCAAAGCAGAGGATGCTGGGAAAAAGGCAA ATGAGTTGGAGTTGCTGCTTGAAGCAGAAAAATACAGAATCAAGGAGCTTGAAGAGCAGAACAGTGCATTAGAAAAGAAATGTATGGATGCAGAAGCAGA TTCCAATAAATACTCTGGCAGGATATCTGAACTAGCATCTGAAATTGAGGCATATCAAGCCAAGTCATCAAGCCTTGAAGTTGCTCTGCAGATTGCTGGG GAGAAGGAGAAAGAGCTAACAGAATTACTGAATTTGTTCACAAATGAAAAGAAAACGTTAGAAGAGGCATCAAGCAGTTCCAATGAGAAGCTGACTGAAG CTGAGAATCTTATTGGGGTGTTGCGTAATGAACTAGTCGTGATGCAAGAGAGGTTCGAAAGCATTGAAAACGATCTAAAGGCTGCTGGATTGAAAGAAGG TGATATAATGGTGAAGCTCAAATCTGCAGAGGAGCAACTTGAGCAACAAGAAAAATTATTAGAGGAAGCCACTACAAGAAGGTCAGAGCTCGAGTCATTA CACGAAACCCTAACAAGGGACTCAGAAATCAAACTTCAAGAAGCATTAGCAAACTTCACTAACAGGGATTCTGAGGCAAAATCCTTGTTTGAGAAACTGA ATACCCTTGAAGACCAAGTAAAGACCTATGAAGAGCTGATAGCTGAAACAACTGGAAGGTCTGCACTTGTGAAGGAAGAATTGGACTTGTGTGTGTTAAA AATGGCAACTTTGGAAACCTCAAATGAAGAACTCAAAAGTCAGATTGTGGAAGCAGAAACTAAGGTTTCCAACTCCTTCTCAGAGAATGAACTCTTAGTT GAGACAAACAATCAGCTGAAAAGCAAGATCGATGAACTTCAGGATTTGCTAAACTCTGCCATTTCTGAGAAGGAAGCCACATCTCAACAACTTGTTTCGC ATGTGAGCACTATCACAGAAATAACAGACAAACACTCAAGAGCCATAGAACTTCATTCTGCAACTGAGTCACGAATGGTGCAAGCTGAAGCGCAACTACA AGAGGCCATTCAGAGCCTCGCACTGAGGGATACAGAAACAAAGGATTTGAATGAGAAGCTAAATGCACTTGAAGGGCATATAAAATTGAACGAAGAACTG GCTCATCAAGGAGCTGCAATTTCTGAATCTCGTAAAGTTGAGCTGGAAGAGAGTCTCCTCAAAATTAAACATCTGGAAACCGTTGTAGAGGAACTGCAAA CCAAGGCAGGTCACTATGAAAAAGAGAGTGGAGGGCTAGCTGAGGCGAATTTGAAGCTCACTCAGGAGCTGGCCTCATATGAGTCCAAACTCGGTGATTT GGAGGCAAAATTATCTGCAATCCTTTCTGAGAAGGATGAAACAGTTGAGCAGCTTCACATTTCAAAGAAGGCCGTTGAGGATTTGAGGCAGCAGCTCTCT GATGAAAGGCAGAAACTACAGTCTCAGATATCTTCAGTTATGGAAGAGAACAACCTCCTCAATGAAACATATCAAAATGGAAAGAAAGAACTTCAATCAG TGATCATCCAGCTTGAAGAAGAACTGATGGGACAGAAGGCGAATGAAGATGCCTTGAAATCTGAGATTGAAAGTCTCAAGGCTGAGGTTGCTGAGAAGTT GGCATTGCAAACTTCTCTTGAGGAACTTAAGAAACAATTGGCGGCAGCTGAAGCTCAACTAAAAGAACAGAAAGAAGCAGATTCTCACAATCAGCTGGAA AAAGATGAAGCACAGAAGAAATCCCTTGAAGCCAAGAACAAAGAAGTGTCACATCTAGAGAACCAAGTGAAGGAACTTGAACAGAAACTGCAAGTGGCTG GCGCTAAATTATTAGAAAAGGGTGATGGAAGCAGTCCGGCTGAACATAAAGATGGATTGGAGATTAAATCCAGAGACATTGGTGCAGTCATTTCCACTCC CACAAAAAGAAAGAGCAAGAAAAAGTTAGAAGCTGCATCTGCACAAGCCTCATCCTCTTCTCAGACTCATACTCAAACTGCAGATGTTTCGCCTGCCATG ACCTTTAAAATCATCTTGGGAGTGGCCTTGGTATCTATCATCATTGGCGTGTATCTTGGAAAGCGTTATTAG
AA sequence Show only first row Show all	>Potri.016G018700.1 pacid=42809723 polypeptide=Potri.016G018700.1.p locus=Potri.016G018700 ID=Potri.016G018700.1.v4.1 annot-version=v4.1 MEGETQVSSDVPVVKVDTDVADPIKVTNGDLPQVEKEGKKEEDETDGEFIKVEKESLDVKDGSHTAEAQSVVEADKPSVVERSLSGSARELLEAQEKMKE LEIELERVAAALKHSESENAQMKDEVLLVNEKLDESGKKYEELEISHKKVKEQIIEAEEKYSAQLNSLQEALQAQETKHKELVEVKESFDGITLELENSR KKMKELEHELEVSSGETKKFEELHKESGSHAESETQRALEFERLLEAAKQSAKEMEDQMASLQEEVKGLYEKVSENQKVEEALKSTTAELSAANEELAAS KSQLLEIEQRLSSKEALIIEITQELDLKKASESQVKEDVSALENLLTATKEDLQAKVSELEGIKLKLQEEINKRESVEAGLKTHEAQVSTVQEELAKVIK EKEALEAAMADLTGNAAQMKELCSELEEKLKTSDDNFCKADSLLSQALSNIAELEQKLKSLEDLHNESGAAAATASQKNLVLEDLIQASNEAAEEAKSQL RELEARFTASEQKNVELEQQLNLVELKSSDAEREVREFSEKISELSTALKEVEEEKKQLSSQMEEYQEKISHLESSLNHSSSRNSELEEELRIAEEKCAE HEDRANMHHQRSLELEDSFQTSHSKAEDAGKKANELELLLEAEKYRIKELEEQNSALEKKCMDAEADSNKYSGRISELASEIEAYQAKSSSLEVALQIAG EKEKELTELLNLFTNEKKTLEEASSSSNEKLTEAENLIGVLRNELVVMQERFESIENDLKAAGLKEGDIMVKLKSAEEQLEQQEKLLEEATTRRSELESL HETLTRDSEIKLQEALANFTNRDSEAKSLFEKLNTLEDQVKTYEELIAETTGRSALVKEELDLCVLKMATLETSNEELKSQIVEAETKVSNSFSENELLV ETNNQLKSKIDELQDLLNSAISEKEATSQQLVSHVSTITEITDKHSRAIELHSATESRMVQAEAQLQEAIQSLALRDTETKDLNEKLNALEGHIKLNEEL AHQGAAISESRKVELEESLLKIKHLETVVEELQTKAGHYEKESGGLAEANLKLTQELASYESKLGDLEAKLSAILSEKDETVEQLHISKKAVEDLRQQLS DERQKLQSQISSVMEENNLLNETYQNGKKELQSVIIQLEEELMGQKANEDALKSEIESLKAEVAEKLALQTSLEELKKQLAAAEAQLKEQKEADSHNQLE KDEAQKKSLEAKNKEVSHLENQVKELEQKLQVAGAKLLEKGDGSSPAEHKDGLEIKSRDIGAVISTPTKRKSKKKLEAASAQASSSSQTHTQTADVSPAM TFKIILGVALVSIIIGVYLGKRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32240			unknown protein		Potri.016G018700 [exp]	0	1
AT2G32240			unknown protein		Potri.006G021200 [exp]	1.41	0.7953
AT5G41670			6-phosphogluconate dehydrogena...		Potri.003G135600 [exp]	6.92	0.6451
AT4G18425			Protein of unknown function (D...		Potri.004G049000 [exp]	19.36	0.6792
AT5G41800			Transmembrane amino acid trans...		Potri.003G138100 [exp]	21.70	0.7108
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	26.83	0.7098
AT5G47490			RGPR-related (.1)		Potri.001G157800 [exp]	27.34	0.6735
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.003G117000 [exp]	30.46	0.6980	Pt-PAK.1
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	33.63	0.6509
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.010G159600 [exp]	36.66	0.6220
AT5G13250			RING finger protein (.1)		Potri.003G164800 [exp]	41.13	0.6842

Compare expression of checked genes

Potri.016G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.