Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22250 494 / 2e-173 UDP-Glycosyltransferase superfamily protein (.1) AT3G02100 219 / 6e-66 UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 192 / 2e-55 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 186 / 3e-53 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22400 186 / 4e-53 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 179 / 1e-50 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 178 / 3e-50 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT3G11340 174 / 2e-49 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 172 / 6e-48 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G59580 168 / 6e-47 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091500 [exp] 245 / 4e-76 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 242 / 7e-75 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 234 / 8e-72 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 219 / 4e-66 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 203 / 7e-60 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 199 / 3e-58 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073766 [exp] 198 / 8e-58 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 198 / 8e-58 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G052000 [exp] 183 / 3e-52 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031068 [exp] 397 / 2e-136 AT3G22250 355 / 5e-120 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 226 / 1e-68 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 222 / 5e-67 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015753 [exp] 216 / 1e-64 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 214 / 3e-64 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 214 / 9e-64 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 210 / 1e-62 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 210 / 2e-62 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 210 / 2e-62 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10034699 [exp] 208 / 1e-61 AT3G02100 285 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G019400.1 pacid=42809466 polypeptide=Potri.016G019400.1.p locus=Potri.016G019400 ID=Potri.016G019400.1.v4.1 annot-version=v4.1 ATGGGAAATATGAAGCGCATACAAACACCCAAAATCATTCTAGTTCCATATCCAGCACAAGGCCATGTTACTCCCTTGCTCAAGCTAGCATCAGCCTTTC TTGACCATGGATTCGAGCCGGTGATGGTCACCCCGGAATTCATCCACCGTAGGATCATATCAAATATTGATCCGAAGTCTCATATTTCATGCATTTCAAT ACCAGATGGGTTGGAAATGGACATGCCTCGTGACTTCTTTGCTAATGAGAAAGCTATGGAAATAAACATGCCAAGTCACTTGGAGGGTCTGGTTCGGAAA TTCAATGAAGATGGTGAAGTGGTGGCGTGCATGATTGTTGATTTATTAGCTTCCTGGGCTATTGAAGTTGGCCATCGATGTGGGGTTCCCGTGGCTGGAT TTTGGCCTGCCATGCTTGCTACATACCAGTTGATTGCAGCCATACCTGACATGGTTAGAACCGGCCTTATTTCTGAAACCGGAAGTCCTCAACATCTAGG TCCATTATGCTTTCTACCTAATCAACCTTTGCTATCTACTGAAGATCTTCCGTGGCTAATTGGAACTCCAGCTTCAAGGAAAGCAAGGTTCGAGTTTTGG ACAAGAACCTTAGATCGATCAAGAAAGCTTTCATGGCTACTTGTGAATTCCTTTCCAGAGGAATGCATTGATCATGACAAACCACACAATGGTGCTTTGC TAGAGAACTCTATGGATCAACCACTCATTTGCCAAGTTGGAGCATTGAGTAAGCATCCACTAGTTAAAAACCCTAGCTTCTGGGAAGAAGATATGAGTTG CTTGCAATGGCTAGACAAGCAAAAGCCTAGCTCGGTTCTTTACATTTCATTTGGAAGTTGGGTTAGCCCAATAGGAGAAGGAAAAGTGAAAAAACTTGCT TTGACACTTGAAGCATTGGGACAACCTTTTATATGGGTGTTAGGGCCTACTTGGCAAGGTGGGTTGCCTTTCGGATACATAGAAAGAGTGTCAAAGCAAG GTAAAGTGGTGTCATGGGCACCGCAACTGAAGGTATTGCAACACAAGGCTGTAATGTGCTATCTCACACATTGTGGATGGAATTCAACAATGGAAGCAAT ACAATGCCAAAAATGCCTTATATGCTATCCAGTTGCTGGGGACCAGTTTGTGAATTGCGCATACATTACTGAGAAATGGAAAATTGGAGTAAAGATCAAT GGATTTGGGGAAAAAGAAATGGAACAAGGCTTGAGGAGAGTGGTGGAAGATCATACGATGAATGATAAGTTGACGAGGCTGCATGAGATAACCATGGGAG AAGAAGCCAGTGTAGTAATGATGTCAAATCTCACAACTTTTGTTAATGATTTCAAGGAGCAAACAAATGGATATCCTATTGAATTATCAATGTAG
AA sequence Show only first row Show all	>Potri.016G019400.1 pacid=42809466 polypeptide=Potri.016G019400.1.p locus=Potri.016G019400 ID=Potri.016G019400.1.v4.1 annot-version=v4.1 MGNMKRIQTPKIILVPYPAQGHVTPLLKLASAFLDHGFEPVMVTPEFIHRRIISNIDPKSHISCISIPDGLEMDMPRDFFANEKAMEINMPSHLEGLVRK FNEDGEVVACMIVDLLASWAIEVGHRCGVPVAGFWPAMLATYQLIAAIPDMVRTGLISETGSPQHLGPLCFLPNQPLLSTEDLPWLIGTPASRKARFEFW TRTLDRSRKLSWLLVNSFPEECIDHDKPHNGALLENSMDQPLICQVGALSKHPLVKNPSFWEEDMSCLQWLDKQKPSSVLYISFGSWVSPIGEGKVKKLA LTLEALGQPFIWVLGPTWQGGLPFGYIERVSKQGKVVSWAPQLKVLQHKAVMCYLTHCGWNSTMEAIQCQKCLICYPVAGDQFVNCAYITEKWKIGVKIN GFGEKEMEQGLRRVVEDHTMNDKLTRLHEITMGEEASVVMMSNLTTFVNDFKEQTNGYPIELSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22250			UDP-Glycosyltransferase superf...		Potri.016G019400 [exp]	0	1
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.003G067600 [exp]	1.00	0.8929	Pt-LOX3.2
AT1G22170			Phosphoglycerate mutase family...		Potri.002G093300 [exp]	4.00	0.8198
AT5G15240			Transmembrane amino acid trans...		Potri.017G083500 [exp]	4.58	0.8132
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	7.21	0.7762
					Potri.019G071050 [exp]	7.48	0.7981
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G103100 [exp]	8.48	0.7862
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G055000 [exp]	9.79	0.7968
AT4G28460			unknown protein		Potri.016G099600 [exp]	14.28	0.7537
AT4G11220		RTNLB2, BTI2	Reticulan like protein B2, VIR...		Potri.013G160900 [exp]	14.56	0.7079
AT1G10740			alpha/beta-Hydrolases superfam...		Potri.010G044400 [exp]	15.49	0.7112

Compare expression of checked genes

Potri.016G019400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.