Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48880 77 / 6e-16 RNI-like superfamily protein (.1.2) AT4G08980 59 / 5e-10 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT4G05460 58 / 1e-09 RNI-like superfamily protein (.1) AT5G57900 56 / 5e-09 SKIP1 SKP1 interacting partner 1 (.1) AT4G30640 54 / 3e-08 RNI-like superfamily protein (.1) AT4G05475 52 / 1e-07 RNI-like superfamily protein (.1) AT4G05470 52 / 1e-07 RNI-like superfamily protein (.1) AT4G05497 44 / 5e-05 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139700 [exp] 85 / 6e-19 AT3G48880 386 / 2e-135 RNI-like superfamily protein (.1.2) Potri.012G137700 [exp] 79 / 5e-17 AT3G48880 389 / 1e-136 RNI-like superfamily protein (.1.2) Potri.002G099100 [exp] 72 / 2e-14 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.018G104900 [exp] 50 / 7e-07 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010351 [exp] 77 / 3e-16 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10027450 [exp] 76 / 2e-15 AT3G48880 434 / 2e-154 RNI-like superfamily protein (.1.2) Lus10036483 [exp] 75 / 3e-15 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10005745 [exp] 72 / 3e-14 AT3G48880 431 / 4e-153 RNI-like superfamily protein (.1.2) Lus10023277 [exp] 59 / 1e-09 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10038528 [exp] 56 / 7e-09 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10026115 [exp] 54 / 2e-08 AT4G05460 166 / 3e-49 RNI-like superfamily protein (.1) Lus10034452 [exp] 50 / 1e-06 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10019104 [exp] 42 / 0.0002 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10008704 [exp] 40 / 0.0007 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G019500.1 pacid=42809849 polypeptide=Potri.016G019500.1.p locus=Potri.016G019500 ID=Potri.016G019500.1.v4.1 annot-version=v4.1 ATGGAAGAAAGAAAGTGGGAGGATTTAGAGTGTGACTGCTTAGTGAATGTGCTTGGAAGGGTGGGCATGGAATCACTTCTATTAGATGTCCCTTTCGTGT GTAAGTCATGGTACAAAGCCAGCCTTGATCCTTCGTGTTGGAAGCATCTTGTTTTCCCTAAAGATTTGGACTCAGAACGGGATTTTACCTTGCTTGATAG ATTTAAGGAAAAATATAAAATTGAAAACTGTTCTGTGGATGCATTTACCAAATTTGTTGTTGGTCGTAGCCATGGGAATTGCACTGGTCTTTTTCTTCCA AATGGCTGTACAGAAGAAGTTGCAAAGTACGTTGCAGATGAGTGTCCTGCCTTGACTGCTCTGTTATTGCCCTCTGATATTCTACGCTGTGAATCATCCA TTGTTCCAACCCTCATTGGGAAATGGGAACATTTGGAGAATTTGTGGCTCGGAAGTTCTGAAAATTTGGTCAATATAATAACCCAAATCAGCCTTGCCTG CAATAAATTTTCCGGGCTGTGTGTATCATCTGCAACCATTCAGGAAGAAGAGGCATCAGCAATTGTCACTAATCTTCCAAATATAAAGTACCTGATTCTC AGGGGGGCATGGATCGATTTCGAGGATCTAGTGATAATATTGCAAGGATGCAAAAACCTTGTACATTTAGATGTACGCGACTGCTTAGGTTTTGACTTCG ATGATGAAAAGGTACTGGAGCTCGCTTCGAATATCAAGACATTCAAGTGTGAAGGTTCAATGCTGGTCGATTACGATGACGGTGTAATTGACCATGACGA CCTTGTTTATGAGGGTTATATTTCAAGTTGA
AA sequence Show only first row Show all	>Potri.016G019500.1 pacid=42809849 polypeptide=Potri.016G019500.1.p locus=Potri.016G019500 ID=Potri.016G019500.1.v4.1 annot-version=v4.1 MEERKWEDLECDCLVNVLGRVGMESLLLDVPFVCKSWYKASLDPSCWKHLVFPKDLDSERDFTLLDRFKEKYKIENCSVDAFTKFVVGRSHGNCTGLFLP NGCTEEVAKYVADECPALTALLLPSDILRCESSIVPTLIGKWEHLENLWLGSSENLVNIITQISLACNKFSGLCVSSATIQEEEASAIVTNLPNIKYLIL RGAWIDFEDLVIILQGCKNLVHLDVRDCLGFDFDDEKVLELASNIKTFKCEGSMLVDYDDGVIDHDDLVYEGYISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48880			RNI-like superfamily protein (...		Potri.016G019500 [exp]	0	1
AT2G38430			unknown protein		Potri.019G030200 [exp]	1.73	0.8275
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Potri.016G034200 [exp]	5.47	0.7746
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001000 [exp]	5.65	0.8096
AT4G18372			Small nuclear ribonucleoprotei...		Potri.015G138100 [exp]	6.48	0.7528
AT1G23890			NHL domain-containing protein ...		Potri.017G129500 [exp]	11.83	0.7750
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030700 [exp]	13.96	0.7485
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Potri.004G058400 [exp]	14.07	0.7893
AT5G01120			Protein of unknown function (D...		Potri.001G247200 [exp]	15.90	0.7592
AT5G59350			unknown protein		Potri.010G206100 [exp]	20.39	0.7845
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.005G131600 [exp]	20.97	0.7391

Compare expression of checked genes

Potri.016G019500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.