Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 543 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 497 / 1e-166 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 473 / 1e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G35030 426 / 5e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62260 425 / 1e-139 MEF9 mitochondrial editing factor 9 (.1) AT1G53600 415 / 9e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G32415 394 / 4e-126 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G13600 383 / 9e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77010 380 / 1e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 372 / 4e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 544 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 508 / 3e-171 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 504 / 2e-169 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G139200 [exp] 471 / 3e-157 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.016G038400 [exp] 454 / 4e-151 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G087300 [exp] 451 / 3e-148 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G111300 [exp] 402 / 9e-128 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G354400 [exp] 390 / 6e-126 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G081700 [exp] 388 / 7e-125 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030549 [exp] 899 / 0 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 565 / 0 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 533 / 1e-179 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 470 / 4e-156 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012514 [exp] 432 / 2e-143 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10032091 [exp] 394 / 7e-126 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 390 / 5e-125 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 385 / 1e-120 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 379 / 3e-120 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 375 / 4e-120 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G019900.1 pacid=42809468 polypeptide=Potri.016G019900.1.p locus=Potri.016G019900 ID=Potri.016G019900.1.v4.1 annot-version=v4.1 ATGAAGCAAAGGCTATTATCAGTTGGGGAACAAGGGAGTCATCATGTCTTCAGTCAAAACAAAAGAATAACCCAGTTAGGAAAATCGGGTCAAATCGAAG ATGCAATCAAATTTTTCACTCAAATGGCCGAGAAAAACACAGTCACATACAATTCAATGATCTCTGTCTACGCGAAAAATGGAAGAATCAATGCTGCACG CAACCTGTTCGATAAAATGCCTCGCAGAAATTTAGTTTCTTGGAACACTATGGTTTCTGGGTACTTGCATAATGGGAAGTTTGATGAAGCTTATAAACTG TTTGTTATAATGCCTCGAAGGGACTTATTTTCTTGGACTTTGATGATTACTTGTTATACGCGTAATGGGGAGGTTGAGAAGGCGAGGGAGTTGTTTGATT CGCTTCCGTGTAGTTATAGGAAAGGTGTTGCTTGTTGGAATGCGATGATTTCAGGTTATGTGAAGAAAGGGAGAGTTAATGAAGCTAAGAGGTTGTTTGA TGAAATGCCGGTTAAGAATTTAATTTCATGGAACTCAATGCTGGCTGGGTATACTCAGAATCGAAAAATGCGATTGGGTTTGGAGTTTTTTAATGAAATG GATGAACGCGATGTAGTTTCATGGAATTTGATGGTTGATGGGTTTATCCAAGTGGGTGATTTGGATTCTGCGTGGAAGTTTTTTCAAGAGACTCAAAAGC CTAATGTTGTTTCTTGGGTTACAATGTTAAGTGGGTTTGCACGAAATGGAAATATTTTGGAGTCTAGGAGGCTCTTTGACCAAATGCCGAGTAGAAATAT TGTTTCTTGGAATGCAATGATTTCTGCTTATGTTCAGAGATGTGAAATTGATGAGGCTAGTCGGTTATTTGAGGAGATGCCGGAGAGGGATTCTGTGTCA TGGACTACTATGATTAATGGGTATGTTCGTATTGGTAAGCTTGATGAAGCAAGAGAGTTGTTGAATGAAATGCCTTACAGGAACATTGGGGCCCAAACAG CAATGATTTCTGGTTACATACAATGTAATAAAGTGGATGAAGCTAGAAGATTCTTTGATGAGATAGGCACCTGGGATGTGGTTTGTTGGAACGCTATGAT TGCAGGTTATGCACACCATGGAAGAATCAATGAAGCTCTCTGTCTATCCAAACGAATGGTCAATAAAGACATGGTCACATGGAATACCATGATTTCTTGT TATGCTCAAGTAGGCCAAATGGATAGAGCCGTGAAGATCTTTGAAGAGATGGGGGAGAGGGATTTAGTATCTTGGAACTCATTAATTGCCGGTTTCATGC TAAATGGACAGAATTTGGATGCTCTAAAAAGTTTTGCATTGATGGGGCATGAAGGTAAGAAACCTGATCAGTTAAGTTTTGCTTGTGGACTAAGTTCATG TGCCACTATTGCAGCCCTGCAAGTTGGGAACCAACTTCACCAGGTGGTTGTGAAGGGTGGTTATTTGAATTATTTAGTTGTCAACAATGCATTGATCACC ATGTATGCTAAATGTGGAAGAATCTTGGAAGCTGGGCTTGTGTTCAATGGAATTTGTCATGCTGACGTCATTTCTTGGAATTCTTTGATTGGTGGGTATG CAATAAATGGATATGGAAAAGAGGCACTTAAACTCTTTGAGGAGATGGCTTCGGAAGGGATGGCTCCTGATGAAGTCACCTTCATTGGTATTTTGTCCGC ATGTAATCATGCTGGCATGGTTGATCACGGCCTAAAATTGTTCAAATGCATGAGTAAAGTGTATGCTATAGAACCATTGGCGGAGCACTATGCTTGTATG GTTGACTTGCTTGGACGGGTGGGGAGGTTAGACGAAGCCTTTGAAATAGTGAGGGGAATGAAGGTGAAAGCCACTGCAGGAGTATGGGGTGCATTACTCG GGGCTTGCCGTGCACATGGGAATCTGGAACTTGGAAGGCTAGCTGCTCACAAGCTTTCGGAATTTGAACCTCATAAAACATCAAATTATGTGCTCTTGTC AAACATTCACGCAGAAGCAAACAGATGGAATGAGGTGCAGGAAGTAAGGATGTTGATGAACGCAAGCAGTACAGTAAAAGAACCGGGATGCAGCTGGGTT GAGGTGAGAAATCAAGTGCACGGCTTTCTGTCAGATGATTCAACTCGGTCTAGACCGGATATTGGCGTTACTCTGGCAAGCTTAAATTCTCACATAAGAA ACGCATTTCACATTTCTGAAGTCTCTGCTTGA
AA sequence Show only first row Show all	>Potri.016G019900.1 pacid=42809468 polypeptide=Potri.016G019900.1.p locus=Potri.016G019900 ID=Potri.016G019900.1.v4.1 annot-version=v4.1 MKQRLLSVGEQGSHHVFSQNKRITQLGKSGQIEDAIKFFTQMAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKL FVIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEM DERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVS WTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISC YAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALIT MYAKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACM VDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCSWV EVRNQVHGFLSDDSTRSRPDIGVTLASLNSHIRNAFHISEVSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.016G019900 [exp]	0	1
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	3.00	0.9299
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	3.46	0.9312
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	6.48	0.9353
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	7.41	0.9271
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	7.74	0.9261
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	9.16	0.9279
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	10.39	0.9233
AT1G26660			Prefoldin chaperone subunit fa...		Potri.008G091400 [exp]	10.95	0.8754
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	13.85	0.9237
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	15.65	0.9259

Compare expression of checked genes

Potri.016G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.