Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22270 540 / 0 Topoisomerase II-associated protein PAT1 (.1) AT4G14990 507 / 5e-171 Topoisomerase II-associated protein PAT1 (.1) AT1G79090 400 / 2e-129 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G020100 [exp] 1065 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.006G021900 [exp] 972 / 0 AT3G22270 699 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.011G143900 [exp] 538 / 0 AT1G79090 734 / 0.0 unknown protein Potri.001G457800 [exp] 503 / 3e-169 AT1G79090 687 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039002 [exp] 645 / 0 AT3G22270 734 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10027297 [exp] 629 / 0 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10010445 [exp] 571 / 0 AT4G14990 721 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10012099 [exp] 553 / 0 AT3G22270 702 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10031788 [exp] 476 / 1e-158 AT1G79090 763 / 0.0 unknown protein Lus10031210 [exp] 451 / 6e-149 AT1G79090 766 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G020600.1 pacid=42810191 polypeptide=Potri.016G020601.1.p locus=Potri.016G020600 ID=Potri.016G020600.1.v4.1 annot-version=v4.1 ATGAATCCAGGAGTTATTGGTGACAGAGGATCTGGATCCTTTTCGAGAGAAAGCTCATCTGCCACTGATTGGGCACAAGATGGAGAGTTTACGAGTTGGT TAGATCAACAAATGTTTAATGCAGAAAATTCTCAGGATAGCAAGAGATGGTCATCACAGCCCCAACCTTCTTCTGCTTGTTTCTCAGAATCAAAAACTTT GTACAGAACTTCCTCATATCCCCAGCAGCCACAACAGCTTCAGCACTTCTCAAGTGAACCAATTCCTGTACCCAAATCAAATTTCGCATCTTTCCCTCCT CCTGGTTGTTCGCCACACCACCTTAATGTTGCTTCTCGTGCTGGTGGACTGCAGTCACACTTGTCTGCCCCGAATCTGTCTCCTCTGTCCAACTCTAATC TTCATCTGGCTGGTTTACAGCATGGGTTACATTATGGTGGAAATCTGGCCCAGATCACGTCTCCTGGCCTTTCTTTTATTAACAGGCCACAAAAACATTG GGTTAATCATGCTGGCTTATTACATGTAGATCAGTCTAGGCTCTTACAGAGTATACTGCAACAACAATTATCGCATCAAAATGGCCTATTGTCTTCCCAA TTAATGTCACCACAGCAGCAATTGCAACAGCAGAGACTGCACCCTTCAGTTCAACCATCTTTGGCTCGTTTTGCAGCAATGCAATCTCAACTCTTTAATG CACATCCTTCATCATTACATATCAGGGAACAAAAACATAAATCATCCCAAAGAAACCGGCGCTTTTCACAAGGCTCTGACACTAGTAGTCAGAAAAGTGA TGCTGATGAAATCGAGAGTATTCTGAAAATGCAGCATGCTGCTACTCATAGCAATGACCCATATATAGACGATTACTACCACCAAGCTTCTCTTGCCAAA AGATCTACCGGGTCGAGAACTAAAAACAATTTCTGCCCGTCTCACTTGAAGGAGCTACCTTCTCGATCTCGTAACAGTGCAGACCAGCATTCTCATCTCC ATTTTGATGCTCTCGGGAAGATGCCCCTCCTTTCCATACGGAGTCCTCATCCCCTTCTTGAAGTTGATCCTCCTGGTTCTGGTGATGGAAACTCTGAACA AATGTCTGAGAGGCCTTTGGAACAGGAACCTATGCTTGCAGCTAGAATCACCATTGAAGATAGCCTGTCTCTTCTTCTTGATGTAGATGACATTGACCGT TTCCTGCAGCGTAGGCGGCAGAACTTGCTTGAAGGATTGGCAGCGTCACTTCAGCTTGTTGACCCACTTGGCCAAACTGGCAAAACTGCTGGACTTGCCT CAAAGGATGACATTGTGTTCCTGCGGTTAGTATCACTTCCCAAGGGTCGAAAGCTCATCTGCAAGTTTCTTCAGCTTCTATATCCCGGGAGTGAACTCAC CCGTGTTGTCTGCATGGCTATTTTCCGTCACTTGAGGTTTTTGTTTGGTGGCATTCCCTCAGATACGGGAGCAGCTGACACAACTACAAATCTCACAAAG ACAGTTTCTGCATGTGTAAGTGGCATGGATCTTCATGCATTGAGTGCTTGCCTTGTAGCCATAGTTTGTTCTTCAGAGCAGCCACCATTTCGGCCTCTTG GTAGCCCTGCTGGGGATGGAGCCACAGTTATTTTGAAGTGTCTTCTTGAAAGAGCTAGTAAACTATTACATGGTCCCCAGGCTTCTCCCAACTGTGTCTA TGCAAAGACACCACCTAGCGCAGAAGGTATTGATTCAGAGGTGCGTGCAGCAACAAAACGAGAAATGCCTGTTGAGCTTTTAAGAGCTTGCCTTCCTCAT ACGAATGAACGCCAGATGGAACTTTTAAGACATTTTGGGCAGCAACGCAATACCATTACTGGCCTGAGTGCACATCCAGGGAATAGTGGTCACATAAACT CTGAATCAGTGAGGAGTTGA
AA sequence Show only first row Show all	>Potri.016G020600.1 pacid=42810191 polypeptide=Potri.016G020601.1.p locus=Potri.016G020600 ID=Potri.016G020600.1.v4.1 annot-version=v4.1 MNPGVIGDRGSGSFSRESSSATDWAQDGEFTSWLDQQMFNAENSQDSKRWSSQPQPSSACFSESKTLYRTSSYPQQPQQLQHFSSEPIPVPKSNFASFPP PGCSPHHLNVASRAGGLQSHLSAPNLSPLSNSNLHLAGLQHGLHYGGNLAQITSPGLSFINRPQKHWVNHAGLLHVDQSRLLQSILQQQLSHQNGLLSSQ LMSPQQQLQQQRLHPSVQPSLARFAAMQSQLFNAHPSSLHIREQKHKSSQRNRRFSQGSDTSSQKSDADEIESILKMQHAATHSNDPYIDDYYHQASLAK RSTGSRTKNNFCPSHLKELPSRSRNSADQHSHLHFDALGKMPLLSIRSPHPLLEVDPPGSGDGNSEQMSERPLEQEPMLAARITIEDSLSLLLDVDDIDR FLQRRRQNLLEGLAASLQLVDPLGQTGKTAGLASKDDIVFLRLVSLPKGRKLICKFLQLLYPGSELTRVVCMAIFRHLRFLFGGIPSDTGAADTTTNLTK TVSACVSGMDLHALSACLVAIVCSSEQPPFRPLGSPAGDGATVILKCLLERASKLLHGPQASPNCVYAKTPPSAEGIDSEVRAATKREMPVELLRACLPH TNERQMELLRHFGQQRNTITGLSAHPGNSGHINSESVRS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020600 [exp]	0	1
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020100 [exp]	2.00	0.7884
AT4G01290			unknown protein		Potri.014G089200 [exp]	15.49	0.6560
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	24.37	0.6285
AT5G57710			Double Clp-N motif-containing ...		Potri.006G175200 [exp]	25.37	0.6234
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G123200 [exp]	30.39	0.5571
AT4G10710		SPT16	global transcription factor C ...		Potri.005G005300 [exp]	36.00	0.6043
AT4G36210			Protein of unknown function (D...		Potri.007G016100 [exp]	39.16	0.5390
AT2G24960			unknown protein		Potri.002G023800 [exp]	40.41	0.5425
AT4G19670			RING/U-box superfamily protein...		Potri.015G117600 [exp]	50.67	0.5641
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Potri.012G075100 [exp]	51.38	0.5476	Pt-PI3.1

Compare expression of checked genes

Potri.016G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.