Plant FIBer expression Database

Potri.016G021400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32170 554 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
AT2G32160 489 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G021900
[exp]
858 / 0 AT2G32170 616 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Potri.006G023400
[exp]
744 / 0 AT2G32170 648 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031038
[exp]
503 / 2e-176 AT2G32170 529 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Lus10035424
[exp]
412 / 8e-143 AT2G32170 485 / 4e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF07942 N2227 N2227-like protein
Representative CDS sequence
>Potri.016G021400.3 pacid=42810568 polypeptide=Potri.016G021400.3.p locus=Potri.016G021400 ID=Potri.016G021400.3.v4.1 annot-version=v4.1
ATGAAGCCTCGTCAAGAACAAGAAGAAGACGAAGAACGACTTCGTCAAAGAAAACTTGAAGAATCCCTTGAAATAAAATCTCTCCGGCGCATAGTCAGTG
CCTACCTTAATTATCCAGAGGCAGCAGAAGAGGATGTGAAAAGATACGAAAGATCGTTTAGGAAGCTTCCTCCTTCTCACAAAGCTTTGTTATCACACTA
CCCTTTGAAGTTTCAAAGTCTAAGAAGGTGTATTTCTATAAATTCGTATTTCATATTTAATATGCTTCAGGCATTTGAGCCACCCCTGGATATGAGCCAG
GACATTGATGACTCTGGGGAATTGCACTTTGAATGGCCACCAAATGATGGGAATGTTTGCTCTCATGAGTCTACCACAGCTAGGGGAAGTTGTTCCAAAC
TTGATGAAGCTTGCTGTGGAGAATCAAGCAATGTGATGAGCAAACTAGCAGAGGGTTTGACGGCCAATGAGGAAGTGCAAATTGAAGGTTGTCATGGGTC
TGATACTGGGAGCTGTCTGGCAGGCGAGGAAAATAACAAAATGACAGCTGAATGTTGTGGGAATCATGTTTCTGATTCCAATGGAAATGTCCCGTCATCA
CCTCGTGATTGGTTGGATCCATCATTTCAGTTGCATGTTCCCCTGGTTGATGTTGATAAGGTCCGTTGTATACTAAGAAACATAGTAAGAGACTGGGCAG
CAGAGGGACAGAAAGAACGTGATCAGTGCTACAAGCCTATTCTTGAAGAGCTCAATTCTTTATTCCCTAGTCGTTGCAACAAAAGTCCCCCTACATGTTT
AGTTCCTGGTGCTGGTTTTGGGCGTCTGGCCTTGGAGATTTCATGTTTGGGTTTCGTGAGCCAGGGAAATGAATTTTCATACTACATGATGATATGCTCA
AGTTTTATTCTTAATCAGACCCAGAATGCAGGGGAATGGACTATATATCCTTGGATCCATAGCAATTGCAATTCACTTTCAGACAGTGACCAACTCCGTC
CTGTTTCATTTCCAGATATTCATCCAGCAAGTGCAGGGATTACTGAAGGATTCTCCATGTGTGGTGGTGACTTTGTTGAAGTCTATAGTGATCCAAGTCA
AGTAGGAGTTTGGGATGCAGTTGTAACTTGTTTTTTTATTGATACGGCACACAATATTGTTGAATACATTGAAATCATATCAAGGATTTTGAAAGATGGG
GGGGTTTGGATAAATCTGGGACCACTCCTGTATCATTTTGCAGACATGTATGGACAAGAAGATAACCGATACTTTGCTGCATTCTGGACAATGAGAAAGA
AATCGGCAGCGGTGGAAAAGCATTCAACATGA
AA sequence
>Potri.016G021400.3 pacid=42810568 polypeptide=Potri.016G021400.3.p locus=Potri.016G021400 ID=Potri.016G021400.3.v4.1 annot-version=v4.1
MKPRQEQEEDEERLRQRKLEESLEIKSLRRIVSAYLNYPEAAEEDVKRYERSFRKLPPSHKALLSHYPLKFQSLRRCISINSYFIFNMLQAFEPPLDMSQ
DIDDSGELHFEWPPNDGNVCSHESTTARGSCSKLDEACCGESSNVMSKLAEGLTANEEVQIEGCHGSDTGSCLAGEENNKMTAECCGNHVSDSNGNVPSS
PRDWLDPSFQLHVPLVDVDKVRCILRNIVRDWAAEGQKERDQCYKPILEELNSLFPSRCNKSPPTCLVPGAGFGRLALEISCLGFVSQGNEFSYYMMICS
SFILNQTQNAGEWTIYPWIHSNCNSLSDSDQLRPVSFPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGVWDAVVTCFFIDTAHNIVEYIEIISRILKDG
GVWINLGPLLYHFADMYGQEDNRYFAAFWTMRKKSAAVEKHST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021400
[exp]
0 1
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021900
[exp]
1.00 0.9806
AT1G73880 UGT89B1 UDP-glucosyl transferase 89B1 ... Potri.012G065100
[exp]
1.41 0.9351
AT4G14570 AtAARE, AARE acylamino acid-releasing enzym... Potri.008G160400
[exp]
3.00 0.9193
AT3G12130 C3HZnF KH domain-containing protein /... Potri.006G191900
[exp]
3.46 0.9134
AT1G07540 MYB TRFL2 TRF-like 2 (.1) Potri.006G086500
[exp]
5.65 0.8782
AT1G79000 ATHAC1, ATHPCAT... ARABIDOPSIS THALIANA P300/CBP ... Potri.019G036800
[exp]
5.91 0.9063
AT1G09700 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BIN... Potri.017G126700
[exp]
7.48 0.9044
AT2G47390 Prolyl oligopeptidase family p... Potri.002G196000
[exp]
7.74 0.8937
AT3G60800 DHHC-type zinc finger family p... Potri.001G117100
[exp]
7.74 0.9025
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Potri.004G197100
[exp]
8.77 0.9023

Potri.016G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.