Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 524 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 522 / 0 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 521 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 514 / 1e-180 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 507 / 7e-178 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 474 / 1e-164 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G11340 239 / 1e-73 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 234 / 7e-72 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59590 234 / 9e-72 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46660 233 / 2e-71 UGT76E12 UDP-glucosyl transferase 76E12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G021300 [exp] 915 / 0 AT1G22400 522 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021700 [exp] 823 / 0 AT1G22400 524 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021200 [exp] 822 / 0 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G020900 [exp] 819 / 0 AT1G22380 538 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.016G021000 [exp] 807 / 0 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 796 / 0 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G020500 [exp] 785 / 0 AT1G22380 527 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.016G021100 [exp] 771 / 0 AT1G22360 505 / 5e-177 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023101 [exp] 768 / 0 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007421 [exp] 555 / 0 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10019364 [exp] 549 / 0 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 529 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 525 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 521 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10010665 [exp] 519 / 0 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017542 [exp] 516 / 0 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 512 / 2e-179 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 509 / 2e-178 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10024584 [exp] 489 / 8e-171 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G021800.1 pacid=42809901 polypeptide=Potri.016G021800.1.p locus=Potri.016G021800 ID=Potri.016G021800.1.v4.1 annot-version=v4.1 ATGGCTTGTAATATTTCAGCTGATCATAAGCCTCATGTTGTCTGCATTCCCACCCCAGCTCAGAGCCACATAAAATCAGTGCTTAAACTAGCAAAACTAT TACATTACAAAGGCTTTCACATTACCTTTGTCAATACAGAGTTCAATCACAGACGTTTACTTAAATCTAGAGGTCCTGATTCCATGAATGGTTTGCCCGA TTTTCGGTTTGAATCCATTCCGGATGGCCTCCCTCCTTCGGATGAGAATGCCACCCAGAATACGTATGCAATTTGCGAGGCTTCCAGGAAGAACTTACTG GGTCCATTTAATGACCTGCTTGACAAGTTGAATGACACAGCTTCTTCAGATGCCCCCCCAGTGACTTGCATCGTCTCTGATGGTTTCATGCCAGTCGCTA TCGATGCTGCTGCGATGCACGAAATTCCTATTGCGTTGTTCTTTACTATCTCTGCTTGCAGCTTCATGGGGATTGAACAATTTCAAGCACTCAAAGAAAA AGGCCTTACGCCACTAAAAGATGAGAGCTTTCTAACAAATGGCTACTTGGACAAAGTGGTAGATTGGATCCCAGGAATGAGAGATATAAAGTTAAGGGAC CTTCCCAGTTTTGTTCGAACAACAGATCCTGATGATTATATGTTTAACTTCGGCGTGGAATGTGCTGAGAGGGCTTCTGAAGGTTCTGCCGTTATTTTCC ATACTTTTGATGCTTTGGAGCAAGAGGTTCTGAATGCCCTTTACTCCATGTTTCCTCGTGTCTATGCGATGGGTCCACTTCAGTTGCTTCTCAATAAAAT TCAAGAAGATGATCTGAATTCTATTGGATGTAATCTATGGAAAGAAGAAGTTGAGTGTCTCCAATGGCTGGATTCCCAGAAACCCAACTCTGTCGTTTAT GTTAATTTTGGCAGCGTAGCGGTCGCTACAAAGCAGCAGCTCATTGAATTTGGAACGGGACTTGCAAAAAGCGGTCACCCATTTTTATGGATCATAAGAC CTGACATGACCGCTGGCGACAGTGCGATATTGCCGCCAGAATTCACTGAAGAAACTAAAGACAGGTGCTTTATTTCAAGCTGGTGTCCACAAGAGGAAGT CCTCGACCACCCATCAGTTGGAGGTTTCCTAACACATTGTGGTTGGGGTTCCACAATTGAGAGCATTTCTTCTGGCGTGCCTATGCTTTGTTGGCCATCC TTCGGTGATCAGCAAACAAACTGTCGGTATGCATGCAATGAGTGGGCAATTGGAATGGAGATTGATAGCAATGTGACGAGAGAAAATGTGGAAAAACAAG TGAGAGAGTTGATGGAAGGAGAAGAAGGTAAGAAAATGAAGAAGAAAGCCATGGAGTGGAAAAAATTAGCCGAGGAGGCCACTGGGCCCGGTGGTTCATC ATCCATGAATTTAGACAGGCTGGTGACGGAAGTGCTTTTGTCATAA
AA sequence Show only first row Show all	>Potri.016G021800.1 pacid=42809901 polypeptide=Potri.016G021800.1.p locus=Potri.016G021800 ID=Potri.016G021800.1.v4.1 annot-version=v4.1 MACNISADHKPHVVCIPTPAQSHIKSVLKLAKLLHYKGFHITFVNTEFNHRRLLKSRGPDSMNGLPDFRFESIPDGLPPSDENATQNTYAICEASRKNLL GPFNDLLDKLNDTASSDAPPVTCIVSDGFMPVAIDAAAMHEIPIALFFTISACSFMGIEQFQALKEKGLTPLKDESFLTNGYLDKVVDWIPGMRDIKLRD LPSFVRTTDPDDYMFNFGVECAERASEGSAVIFHTFDALEQEVLNALYSMFPRVYAMGPLQLLLNKIQEDDLNSIGCNLWKEEVECLQWLDSQKPNSVVY VNFGSVAVATKQQLIEFGTGLAKSGHPFLWIIRPDMTAGDSAILPPEFTEETKDRCFISSWCPQEEVLDHPSVGGFLTHCGWGSTIESISSGVPMLCWPS FGDQQTNCRYACNEWAIGMEIDSNVTRENVEKQVRELMEGEEGKKMKKKAMEWKKLAEEATGPGGSSSMNLDRLVTEVLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021800 [exp]	0	1
AT3G54890		LHCA1	photosystem I light harvesting...		Potri.008G041000 [exp]	1.00	0.9877	2
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021300 [exp]	1.41	0.9856
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.005G239300 [exp]	3.00	0.9828	LHB1.3,Lhcb1-2
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.006G265200 [exp]	4.89	0.9704
AT4G33840			Glycosyl hydrolase family 10 p...		Potri.009G087800 [exp]	7.87	0.9242
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Potri.008G204900 [exp]	10.58	0.9629
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G222300 [exp]	10.90	0.9657
AT1G08380		PSAO	photosystem I subunit O (.1)		Potri.004G199400 [exp]	10.95	0.9685
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.002G016000 [exp]	11.22	0.9665	PETE.2
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G020400 [exp]	16.24	0.9071

Compare expression of checked genes

Potri.016G021800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.