Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50500 1263 / 0 ATVPS53, HIT1 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2) AT1G50970 503 / 6e-170 Membrane trafficking VPS53 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009007 [exp] 1352 / 0 AT1G50500 1308 / 0.0 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2) Lus10009635 [exp] 1191 / 0 AT1G50500 1140 / 0.0 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF04100 [poplar] [flax] Vps53_N Vps53-like, N-terminal CL0295 [poplar] [flax] PF04437 [poplar] [flax] RINT1_TIP1 RINT-1 / TIP-1 family
Representative CDS sequence Show only first row Show all	>Potri.016G023000.3 pacid=42809852 polypeptide=Potri.016G023000.3.p locus=Potri.016G023000 ID=Potri.016G023000.3.v4.1 annot-version=v4.1 ATGGACAAGTCAAGTGCACTGGAGTATATCAACCAGATGTTTCCTACAGAGGCGTCTTTATCTGGAGTTGAGCCGCTTATGCAAAAGATACATAGTGAGA TTCGTCGCGTAGATGCTGGAATACTAGCCGCTGTTCGGCAACAGAGCAATTCGAGAACAAAAGCGAAGGAAGATCTTGCTGCTGCTACACATGCTGTGGA GGAACTCATGTACAAGATTCGGGAAATAAAATCCAAAGCTGAGCAGAGTGAGACAATGGTTCAGGAAATATGTCGTGACATCAAGAAGTTGGATTTTGCA AAGAAGCATATAACAACCACAATTACAGCTCTGCATCGTCTCACCATGTTAGTGTCTGCTGTTGAGCAGCTTCAAGTAATGGCTTCCAAACGGCAATATA AGGAGGCAGCTGCCCAGCTGGAGGCAGTAAATCAATTATGCAGTCATTTTGAAGCCTATAGGGATATACCAAAGATCACAGAGCTCAGAGAGAAGTTCAA AAATATTAAGCAATTACTCAAGTCACATGTATTTTCTGATTTCTCAAGCTTAGGTACTGGAAAAGAAACAGAGGAAGCTAATTTACTTCAGCATTTATCT GATGCATGCTTAGTTGTTGATGCTTTAGAGCCATCTGTGAGGGAAGAGTTGGTAAATAATTTTTGCAGCAGGGAGCTTACTTCCTACGAACAGATCTTTG AAGGAGCTGAACTAGCTAAGCTGGATAAAACCGAACGAAGATATGCGTGGATCAAACGTCGGATAAGAACAAATGAGGATACATGGAAGATCTTTCCTCC CTCATGGCATGTTCCTTACCGGCTCTGTATCCAATTCTGTAAGAAGACAAGAAAGCAGCTTGAGGTTATACTTGATTATCTCAAAGAGAAGCCTGATGTT GGAACCTTGTTGATGGCACTACAAAGAACTCGAGAATTTGAGGACGAATTGGCTGAGAAATTTGGAGGAGGCACTCGAAGTAGAGAGATTGGAAATGAGA TTGAAGAAATTGGTAAAGAAAATAATGGTCAAAATGTGTCAGATATTCGAAAGAAATATGAAAAAAAGTTTGCTGCAAACCAAGGGAGCGTGCCTGAAGA GAAGGATGGAAATAAAGATTTGTCAGTGCCAGGAGCTGGGTTTAACTTCCATGGAATCATATCATCTTGTTTTGAACCTCATTTGATAGTATATATCGAA CTGGAACAGAAAACACTGATGGAGAATCTGGAAAAACTTGTTCAGGAGGAAACATGGGATATCGAGGAGGGTGGTCAGAATAATGTCTTAACAAGTAGCA TGCAGTTGTTTCTTATAATCAAGAGGAGTTTAAAGAGGTGTAGTAATCTCACAAAGAACCAGACATTATTAAATTTGTTCAAGGTATTTGAAAGAGTTCT CAAAGCATATGCAGCAAAGCTTAAAGCAAGACTACCTAAGGGTGGTATGGGGATTGTTGCAGCAGCCACGGGTATGGATGGACAAATAAAGACATCTGAC AGAGATGAAAGGGTGATTTGTTTCATTGTCAATTCAGCTGAATACTGCCAAATAACGTCCGGTGAACTGGCTGAAAGTGTATCCAAAATAATCGATCATC AATTAGCTACTGGAGTGGATATATCAGCAGTTGAGGAAGAATTTTCAGGGCTTATTACAGAGGCATTAATGACCCTAGTACATGGCCTGGAAACTAAATT TGATGCTGAAATGGCTGCAATGACACGTGTTCCATGGGCAACACTTGAAAGTGTTGGCGACCAATCAGAGTATGTGAATGGCATAAATATGATCCTCTCA AGCAGCATTCCAGCACTAGGAAGACTTCTTTCACCGATACATTTCCAGTACTTCTTGGACAAGCTTGCATCATCCCTTGGCCCACGCTTCTTTGCCAACA TTTTCAAATGCAAGCAAATATCAGAAACTGGAGCCCAACAAATGCTTCTAGATACCCAAGCTGTCAAGACAATTCTTCTGGAGGTTCCTTCCCTTGGTCG ACAGACATCAAGTGCCGCTAGCTATTCAAAGTTTGTGAGCCGTGAGATGAGTAAAGCTGAAGCACTTTTGAAGGTTATACTCTCCCCAGTTGATTCTGTG GCAGATACATATAGGGCACTGCTACCAGAGGGAACACCAATGGAGTTTCAGCGAATTCTGGAGCTAAAGGGTCTTAAAAAAGCAGATCAGCAGACTATAC TTGACGACTTCAACAAGCACAGCCCTGCAATTACTCAACCTTCAATTGCACCATCTGTCGCACCAGCTGCCCCCCTTGTTCCTGCAACTCCTGCAATTGC CAACTCAACAGCTGGATTTAGTGCTTCCCGAGAAGATGTACTTACTAGAGCTGCTGCACTTGGACGCGGTGCAGCCACAACCGGTTTCAAACGGTTCCTT GCTCTAACTGAAGCAGCAAAAGACCGGAAGGATGGCCCGTTTAGGAAACTCTTCAATGCATGA
AA sequence Show only first row Show all	>Potri.016G023000.3 pacid=42809852 polypeptide=Potri.016G023000.3.p locus=Potri.016G023000 ID=Potri.016G023000.3.v4.1 annot-version=v4.1 MDKSSALEYINQMFPTEASLSGVEPLMQKIHSEIRRVDAGILAAVRQQSNSRTKAKEDLAAATHAVEELMYKIREIKSKAEQSETMVQEICRDIKKLDFA KKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKNIKQLLKSHVFSDFSSLGTGKETEEANLLQHLS DACLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEDTWKIFPPSWHVPYRLCIQFCKKTRKQLEVILDYLKEKPDV GTLLMALQRTREFEDELAEKFGGGTRSREIGNEIEEIGKENNGQNVSDIRKKYEKKFAANQGSVPEEKDGNKDLSVPGAGFNFHGIISSCFEPHLIVYIE LEQKTLMENLEKLVQEETWDIEEGGQNNVLTSSMQLFLIIKRSLKRCSNLTKNQTLLNLFKVFERVLKAYAAKLKARLPKGGMGIVAAATGMDGQIKTSD RDERVICFIVNSAEYCQITSGELAESVSKIIDHQLATGVDISAVEEEFSGLITEALMTLVHGLETKFDAEMAAMTRVPWATLESVGDQSEYVNGINMILS SSIPALGRLLSPIHFQYFLDKLASSLGPRFFANIFKCKQISETGAQQMLLDTQAVKTILLEVPSLGRQTSSAASYSKFVSREMSKAEALLKVILSPVDSV ADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHSPAITQPSIAPSVAPAAPLVPATPAIANSTAGFSASREDVLTRAAALGRGAATTGFKRFL ALTEAAKDRKDGPFRKLFNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Potri.016G023000 [exp]	0	1
AT4G32120			Galactosyltransferase family p...		Potri.018G024500 [exp]	5.19	0.9003
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	5.29	0.9059
AT2G27900			unknown protein		Potri.001G212600 [exp]	6.48	0.9019
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Potri.002G228200 [exp]	10.24	0.8998
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	12.00	0.8961
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	15.00	0.8712
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	15.74	0.9002
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	19.18	0.8862
AT5G26910			unknown protein		Potri.013G010500 [exp]	21.63	0.8761
AT5G50860			Protein kinase superfamily pro...		Potri.015G103300 [exp]	22.13	0.8232

Compare expression of checked genes

Potri.016G023000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.