Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22330 649 / 0 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 629 / 0 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G26742 469 / 4e-157 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT5G62190 290 / 4e-89 PRH75 DEAD box RNA helicase (PRH75) (.1) AT1G55150 245 / 8e-74 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 244 / 1e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 238 / 1e-69 DEAD box RNA helicase family protein (.1.2) AT3G01540 237 / 2e-69 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G31970 233 / 8e-69 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT1G20920 234 / 4e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024100 [exp] 890 / 0 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.005G000100 [exp] 475 / 5e-159 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000500 [exp] 475 / 6e-159 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.015G133400 [exp] 289 / 1e-88 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.012G131000 [exp] 288 / 5e-88 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.003G038300 [exp] 238 / 5e-71 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 237 / 4e-70 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 236 / 1e-69 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G098800 [exp] 236 / 1e-69 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035410 [exp] 669 / 0 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 668 / 0 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 634 / 0 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 633 / 0 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10001057 [exp] 475 / 2e-159 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 433 / 1e-143 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10015020 [exp] 296 / 6e-91 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 296 / 7e-91 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10027388 [exp] 290 / 2e-88 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 250 / 7e-74 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G023100.8 pacid=42810177 polypeptide=Potri.016G023100.8.p locus=Potri.016G023100 ID=Potri.016G023100.8.v4.1 annot-version=v4.1 ATGCTATCAACAGTTCTAAGAAGAACATCTTCTTCTTCTTTACTAGCCCCAAATCGGGCTTTAGCCCCCGTAACCCTTCTACATCACCAATTATCGACCA CAGCGTCACCAATTCCTCTCAGAAACGGGTCTCTCTCCGGTGAGATTAGACCCTTTTCTTCTTTTCTTGCTTCTCTAATCAAAGCTAGAGACTTTCATGT CAAATCTGGGCCGTTGGATTTTAAGGCGAGTTCAGTGACTGAAACTTTTAACGCTGTACCTGATTATGGCTATGATGAAGGGAAAGGGAATGAAGAGGGG CTTGAAATTTCAAGATTAGGGATTTCTCAAGAGATTGTCGGCGCTTTAGCTAAAAAAGGGATCACGAAATTATTTCCCATTCAGAGAGCTGTGCTTGAAC CGGCTATGCAAGGGAAGGACATGTTTGGTCGAGCTCGAACTGGAACAGGAAAAACACTTGCTTTTGGAATTCCTATACTTGATAAAATTTTGCAATTCAA TGCGCAACACGGGAGAGGGAGGTACCCATTGGGAATAGTTATGGCTCCAACAAGAGAACTTGCAAGACAAGTAGAGAAGGAGTTTCGTGAGGCTGCACCT AGTTTGGATATCACTTGTTTATATGGGGGTACTCCTATTTCACAACAAATGAGGGATCTTGAATATGGTGTTGATGTTGTTGTTGGCACACCTGGTCGTA TTATTGATCTGATGAAGAGGGGCTCGCTGGTTTTGTCAGAAGTTCAGCATGTTGTTCTTGATGAAGCTGATCAGATGCTTGGTGTGGGATTTGTTGATGA TATTGAGACAATCTTGTCGAGTGTACCTCAGAAACGCCATAGTATGTGCTTCTCTGCTACAATGCCAAGTTGGATCAGAGAACTTGTTAGGAAGTATCTA AAAGATCCTCTGACTATTGATCTTGTCGGAGATTCTGATAAAAAGCTGGCTGAAGGAATTACCCTCTATTCAATTGCCTCAGACTTGTATGCAAAAGCAT CGATTCTTGGTCCTCTGATTACAGAACATGCTAAAGGAGGAAAGTGCATTGTTTTCACTGAAACAAAGCGTGATGCTGATCGATTAGCATATGCCATGGC AAAAACCTATAAATGTGAGGCTTTGCATGGTGATATTTCACAGAGTGTGAGAGAAAGGACACTTTCAGGCTTCCGAGAGGGGCATTTCAATATTTTAGTT GCCACTGATGTTGCGGCACGTGGTCTTGATGTCCCTAATGTTGATCTGATAATACATTATGCACTTCCGAGATGTTCAGAGACTTTTGTTCATCGATCTG GCCGTACCGGTCGTGCTGGGAAGAAAGGAACTGCAATTCTTATTTATACTCAAGATGAGAGCAGGCAAGTCCGGATAATTGAACGTGACACAGGGTGCAA ATTTTTAGAGCTCCCTAAGATCGCTGTTGATGGTGAAAGCATAGACATGTACAATGACATGGGTCGTGGACGATTTAACTCATTTGGAAGTCCAAGAGGA TTTGGTGATGGTGGTCGATATGGTGGTCAGGGGAATTATGGATCTGGGCAAGGCTTTAGGAATTCTGGTTTTGGCCGCTCTGATGGTCAATTTTCAGGAT CAAGTCGCAATGGCTATAACAGAAACCAATCAGGGAATTTTGGCCGCTCTAGTAACTTTGGCGAGCCAAGAACAGACCGCTCCAGTAATTTTGGGGACTT CGGTTCAGGCCGTTCTAGCAGTTTTGGTGACTTCGGTTCAGGCCGTTCTAGCAGTTTTGGGGACTCTGGTTCAGGCCGTTCTAGCAGTTTTGGCAACAAT TCAGGCCTAACCAATAGATCACAGAATGATTATCATTTTAGACAATCTGCGGGCTTTGGAGACTCCAGGAAGTGA
AA sequence Show only first row Show all	>Potri.016G023100.8 pacid=42810177 polypeptide=Potri.016G023100.8.p locus=Potri.016G023100 ID=Potri.016G023100.8.v4.1 annot-version=v4.1 MLSTVLRRTSSSSLLAPNRALAPVTLLHHQLSTTASPIPLRNGSLSGEIRPFSSFLASLIKARDFHVKSGPLDFKASSVTETFNAVPDYGYDEGKGNEEG LEISRLGISQEIVGALAKKGITKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKILQFNAQHGRGRYPLGIVMAPTRELARQVEKEFREAAP SLDITCLYGGTPISQQMRDLEYGVDVVVGTPGRIIDLMKRGSLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQKRHSMCFSATMPSWIRELVRKYL KDPLTIDLVGDSDKKLAEGITLYSIASDLYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKTYKCEALHGDISQSVRERTLSGFREGHFNILV ATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDESRQVRIIERDTGCKFLELPKIAVDGESIDMYNDMGRGRFNSFGSPRG FGDGGRYGGQGNYGSGQGFRNSGFGRSDGQFSGSSRNGYNRNQSGNFGRSSNFGEPRTDRSSNFGDFGSGRSSSFGDFGSGRSSSFGDSGSGRSSSFGNN SGLTNRSQNDYHFRQSAGFGDSRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.016G023100 [exp]	0	1
AT5G47360			Tetratricopeptide repeat (TPR)...		Potri.001G154901 [exp]	1.00	0.9353
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.003G158100 [exp]	2.44	0.9267
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	3.46	0.9212	Pt-CARB.1
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	7.14	0.9035
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	9.59	0.9207
AT1G36390			Co-chaperone GrpE family prote...		Potri.002G090000 [exp]	9.64	0.8883
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Potri.003G166700 [exp]	11.66	0.8733
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	12.48	0.9168
AT3G10630			UDP-Glycosyltransferase superf...		Potri.008G018200 [exp]	13.30	0.8774
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	13.41	0.9172

Compare expression of checked genes

Potri.016G023100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.