Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 193 / 6e-62 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 192 / 2e-61 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29490 184 / 1e-58 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29450 180 / 6e-57 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29470 179 / 1e-56 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT2G29480 174 / 2e-54 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29460 173 / 3e-54 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29440 172 / 5e-54 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT1G17180 168 / 3e-52 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78370 165 / 4e-51 ATGSTU20 glutathione S-transferase TAU 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023200 [exp] 446 / 9e-162 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.006G024200 [exp] 380 / 1e-135 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.013G072400 [exp] 278 / 1e-95 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.010G061200 [exp] 233 / 7e-78 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.012G052200 [exp] 230 / 1e-76 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175100 [exp] 227 / 3e-75 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061100 [exp] 226 / 3e-75 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Potri.010G060900 [exp] 225 / 1e-74 AT2G29420 175 / 7e-55 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G070900 [exp] 224 / 5e-74 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001491 [exp] 258 / 2e-87 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10007897 [exp] 250 / 2e-84 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10041654 [exp] 242 / 6e-81 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 200 / 1e-64 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10021103 [exp] 195 / 1e-62 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10007896 [exp] 194 / 2e-62 AT2G29490 171 / 2e-53 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Lus10016471 [exp] 192 / 1e-61 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 192 / 1e-61 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10035241 [exp] 191 / 3e-61 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040727 [exp] 190 / 1e-60 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF02798 [poplar] [flax] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G023340.1 pacid=42809571 polypeptide=Potri.016G023340.1.p locus=Potri.016G023340 ID=Potri.016G023340.1.v4.1 annot-version=v4.1 ATGGCAGAAGAAGTTAAGGTGTTTAGGACATGGTCAAGTCGATTTGCTCTGAGAGTCATCTGGGCACTGAAATTGAAGGGTGTTGAGTTTGATACCATAT ATGAAGATCTCTCCAACAAGAGCCCTTTACTCTTGCAATACAATCCTATCCACAAGAAGGTTCCCGTGCTTGTCCACAATGGTAAAGTCATCTGTGAATC ACTTGTCATTCTAGAATACATCGACGAGACATGGAAGCAAAATCCTCTGTTGCCTGAAGATCCTCACCAGCAAGCCAATGCTCGTTTCTGGGCCAAGTTT GGTGATGATAAGGTTTTGCAATCAATTGTGTGGGGTGTGCTTATGAAGGAGGGAAAAGAGCTAGAAGAAGGGGTCCTTGCATCCTTGGAGAACTTGAAAT ATTTAGAAGAAGAGATAAGAGGAAAGAAATTCTTTGGTGGGGAGACTATTGGGCTAGCGGATATTGCATTAGGATGGCTTGCTTATTACCTTGATATCAT TGAGGAGATACTAGGTCTAAAACTGATAGACCAGGAAAAGTTTCCATCCTTAGCGGCATGGAAGCAGGAATTTGCAAATGCTCCAATCATCCATGAGAAC TGGCCGGATAGAGACAAGCTGGTTAACAAGTTTGTTGCCATGCGTGAGGCCAAACTTGGAAAAGAAACACCTAAATGA
AA sequence Show only first row Show all	>Potri.016G023340.1 pacid=42809571 polypeptide=Potri.016G023340.1.p locus=Potri.016G023340 ID=Potri.016G023340.1.v4.1 annot-version=v4.1 MAEEVKVFRTWSSRFALRVIWALKLKGVEFDTIYEDLSNKSPLLLQYNPIHKKVPVLVHNGKVICESLVILEYIDETWKQNPLLPEDPHQQANARFWAKF GDDKVLQSIVWGVLMKEGKELEEGVLASLENLKYLEEEIRGKKFFGGETIGLADIALGWLAYYLDIIEEILGLKLIDQEKFPSLAAWKQEFANAPIIHEN WPDRDKLVNKFVAMREAKLGKETPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G023340 [exp]	0	1
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.016G023200 [exp]	1.00	0.9931
AT1G51920			unknown protein		Potri.003G061200 [exp]	5.29	0.9038
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.009G022800 [exp]	9.38	0.9283
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193200 [exp]	9.59	0.9212
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.003G219550 [exp]	9.94	0.9094
AT4G35160			O-methyltransferase family pro...		Potri.009G139700 [exp]	10.19	0.9042
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	10.48	0.9183
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014500 [exp]	12.00	0.9158
AT4G01575			serine protease inhibitor, Kaz...		Potri.014G108800 [exp]	12.24	0.9037
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437200 [exp]	14.89	0.8576

Compare expression of checked genes

Potri.016G023340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.