Plant FIBer expression Database

Potri.016G023400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41050 395 / 2e-136 PQ-loop repeat family protein / transmembrane family protein (.1)
AT4G36850 297 / 9e-98 PQ-loop repeat family protein / transmembrane family protein (.1)
AT4G20100 182 / 1e-54 PQ-loop repeat family protein / transmembrane family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G025100
[exp]
506 / 0 AT2G41050 210 / 2e-65 PQ-loop repeat family protein / transmembrane family protein (.1)
Potri.007G031800
[exp]
294 / 9e-97 AT4G36850 507 / 0.0 PQ-loop repeat family protein / transmembrane family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016795
[exp]
291 / 2e-95 AT4G36850 508 / 0.0 PQ-loop repeat family protein / transmembrane family protein (.1)
Lus10022491
[exp]
292 / 3e-94 AT4G36850 496 / 2e-174 PQ-loop repeat family protein / transmembrane family protein (.1)
Lus10014572
[exp]
41 / 0.001 AT5G40670 418 / 3e-149 PQ-loop repeat family protein / transmembrane family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0141 MtN3-like PF04193 PQ-loop PQ loop repeat
Representative CDS sequence
>Potri.016G023400.5 pacid=42810258 polypeptide=Potri.016G023400.5.p locus=Potri.016G023400 ID=Potri.016G023400.5.v4.1 annot-version=v4.1
ATGCCAACGTGCCCCCAGTATTGTTCACAATGGGCTAGAATTTACGTGAAGTATTGTCTCTGCAGTATGAAAGATGGGGTTTCTTTAACTTTAGGTGTGA
TTAGTGTTTTGAGTTGGGGAGTTGCTGAGATACCTCAAATCATCACAAACTATAAGGAGAAATCCACTGAAGGACTTTCCCTTGCTTTCTTGTTGACATG
GATTATAGGGGATCTTTTCAATGTTTTTGGCTGTATGTTGGAACCAGCTACTCTTCCAACCCAATACTACATGGCAGTGTTGTATACAATTACTACCTCA
GTTCTGACAGCACAAACTATTTACTATGGTCACATCTATCATCGACTGAAACGTAACAGACGATGCATCAAGGCCACCGTCTCTAGTCAGACTGAAGAGG
CTGGAAGAATTAGACAAGGAAATAGTGATGCTGGAGCACAAGTCAACAATGCTGGTAAACAAAGAAATGAAACTGCCTCTCCTGATGGCGCAAATGGTTC
GAGTTCACCGATTCCTTTTCCAACACTTTTTCAAAAAAGTTCCCCTGGAAGAGAGCTATACTACATGTCAGCAAGATCTCTTTCAAGCAGCCATACTCCC
GCAGTAGGATCCTTTTTAGCACAAAGAGTGGCTTCTCCATCATTTTCGATGAGGAATTCGATTGAAGATCCACTGCTTGGTGGAGATGCAACCACACAAT
CTGCACCGAATTTGAACACCAAAACCATGCTATGTGTGGTGTCTGTAGTCACACTCTTAGGAACACTTAATCTTCATCAATCAGCAAACAACAGGCTTGC
CAGAGCCTTTGAAAATAAACATCAAGGATTTGTGATTCAAGTAGGACGGAAGATCTTGCAGGCGAGTAGCAGAATGTCACATGAAAATTATAGTGAGGGA
AGTGGAATTGGAACGTTCCTTGGTTGGTCGATGGCAGCTATTTACATGGGTGGACGGCTTCCTCAAATTTTCCTAAATATCAAGAGGGGCAACGTTGAGG
GGCTTAATCCATTAATGTTCGTCTTCGCTTTGATTGGGAATATCACATATGTAGCAAGCATACTAGTCGATAGCGTGGCATGGTCAAAGATCAGCGCAAA
CCTGCCATGGCTGGTGGATGCAGGAGGTTGTGTGCTGCTTGACACTTGCATACTGCTTCAATTCGCCTACTTTCGCCACCGGAGGCGCCAGTTACTGGAG
AACAAACTACTGAACTGTAATTCAGCTTAG
AA sequence
>Potri.016G023400.5 pacid=42810258 polypeptide=Potri.016G023400.5.p locus=Potri.016G023400 ID=Potri.016G023400.5.v4.1 annot-version=v4.1
MPTCPQYCSQWARIYVKYCLCSMKDGVSLTLGVISVLSWGVAEIPQIITNYKEKSTEGLSLAFLLTWIIGDLFNVFGCMLEPATLPTQYYMAVLYTITTS
VLTAQTIYYGHIYHRLKRNRRCIKATVSSQTEEAGRIRQGNSDAGAQVNNAGKQRNETASPDGANGSSSPIPFPTLFQKSSPGRELYYMSARSLSSSHTP
AVGSFLAQRVASPSFSMRNSIEDPLLGGDATTQSAPNLNTKTMLCVVSVVTLLGTLNLHQSANNRLARAFENKHQGFVIQVGRKILQASSRMSHENYSEG
SGIGTFLGWSMAAIYMGGRLPQIFLNIKRGNVEGLNPLMFVFALIGNITYVASILVDSVAWSKISANLPWLVDAGGCVLLDTCILLQFAYFRHRRRQLLE
NKLLNCNSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41050 PQ-loop repeat family protein ... Potri.016G023400
[exp]
0 1
AT5G09380 RNA polymerase III RPC4 (.1) Potri.005G126700
[exp]
6.92 0.8443
Potri.012G066225
[exp]
7.74 0.8452
AT5G09380 RNA polymerase III RPC4 (.1) Potri.006G143500
[exp]
11.83 0.8355
AT4G03180 unknown protein Potri.014G134700
[exp]
18.65 0.7663
AT3G26050 TPX2 (targeting protein for Xk... Potri.008G180900
[exp]
21.49 0.8020
AT2G16650 PRORP2 proteinaceous RNase P 2 (.1) Potri.004G185200
[exp]
31.22 0.7841
AT3G12340 FKBP-like peptidyl-prolyl cis-... Potri.007G000500
[exp]
39.91 0.7695
AT5G06220 LETM1-like protein (.1.2) Potri.001G187100
[exp]
41.95 0.7892
AT1G65450 HXXXD-type acyl-transferase fa... Potri.002G244600
[exp]
42.42 0.7589
AT1G71840 transducin family protein / WD... Potri.013G116900
[exp]
47.32 0.7990

Potri.016G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.