Plant FIBer expression Database

Potri.016G023500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67440 587 / 0 EMB1688 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1)
AT1G67460 273 / 1e-88 Minichromosome maintenance (MCM2/3/5) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G025300
[exp]
762 / 0 AT1G67440 584 / 0.0 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015794
[exp]
623 / 0 AT1G67440 596 / 0.0 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF03193 RsgA_GTPase RsgA GTPase
Representative CDS sequence
>Potri.016G023500.1 pacid=42810504 polypeptide=Potri.016G023500.1.p locus=Potri.016G023500 ID=Potri.016G023500.1.v4.1 annot-version=v4.1
ATGCCAATCCCTTCCCTCTCCCTCCTCCGCCACCGCACTCCCACCTTCCTCCGCCACATAACCACCTTCAGCCACCACCAAAACCACCACTCTCTCCTTA
TCACCTCATCCAAACACCAAAACCAGCCCAATCTCTCCAGAAAACCTCCACCGAACAACAACCTCCTCAAAGCCAAACAAATCCTAAATTCCAAAAAAGA
CTTCTCCACTCTCTCTCCGATCCTCTCCCCTAACCACACCCCTGCCGAGCTCTCCGATTCTCAAGCCATCGGCACCGTCGCCGCCTCCCAAGCGAACTTT
ATGCGCGTGATTGTCACCGCCGGACCTTCTAGAAGTAGAGAGATAGAAGATTCTAGTAAAAATGGAAGTGAATTGCTATGCGTGGTTCGGGCGGTGTTGA
AGAAGATAAAACGGAGAGTTTTGGTGGGTGATAAGGTGGTGGTTGGGTCAATTGACTGGGTAGATAGGAGAGGAATGATTGAGAATGTTTTTCAACGGAG
TTCGGAGATTTTAGACCCTCCTGTAGCGAATGTAGATCATTTGTTGGTTCTTTTTTCGCTTGAGCAGCCGCGGTTGGATTCATTTGTGTTGACGAGGTTT
TTGATTGAGGCTGAATCAACTGGGATTCCGATAACGCTCGCATTAAATAAAGTGGAACTTGTTGATCAAGAGGTGTTGAGTGATTGGAACTCTAGGTTGA
GAAGTTGGGGTTATGAGCCACTCTTTTGCAGTGTTGATTCGAAAATGGGGCTTGATACTTTGGCTTCTGTTTTGAGAGATCAAACGACAGTGATTTTGGG
TCCTAGTGGAGTTGGGAAATCTAGCTTGATTAATGCTTTGAGGAATAAACCCAATTCCCATGATGAAGCAGATAATTGGTTTGATCCTATAATGGGTAGC
AAGTGGTTTGAAGACCAGCGTGTTGGGGAAGTTTCGACGAGAAATGGTAGAGGGAAGCACACTACACGTAATGTTTCTTTGCTTCCACTCGGTGGAGGAG
GTTATGTCGCTGATACTCCTGGGTTTAGCCAGCCTAGTTTGTTGAAAGTAACAAAGCAATCTCTTGCACAGTATTTTCCTGAGATAAGGACAGTGCTTAG
TGTCAATGAACCGGCTAAATGCACATTCAAAGATTGCTTGCATGTTGGCGAACCTGGGTGCATAGTGAAAGGGGATTGGGAAAGGTATCCCTTGTATTTT
CAGCTTCTTGATGAGATCAAAATCAGGGAGGAATTTCAGTTAAGGACATTTGGAACCAAAAGGGAGGATAACGTAAGGTACAAGGCTGGAGACATGGGTG
TCCAGCAAGAAGAACCACGCCTGGAGCCCAAGAAGCATAGAAGACAGTCTCGAAAAAGGATTAACCAATCAATACTTGATGAGTTGAATGAACTTGCCAA
TGACGAGGATTTATTCGATGACCCTGTCTTGAGGGCACACAAGAACGGTAACTTTTAG
AA sequence
>Potri.016G023500.1 pacid=42810504 polypeptide=Potri.016G023500.1.p locus=Potri.016G023500 ID=Potri.016G023500.1.v4.1 annot-version=v4.1
MPIPSLSLLRHRTPTFLRHITTFSHHQNHHSLLITSSKHQNQPNLSRKPPPNNNLLKAKQILNSKKDFSTLSPILSPNHTPAELSDSQAIGTVAASQANF
MRVIVTAGPSRSREIEDSSKNGSELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSLEQPRLDSFVLTRF
LIEAESTGIPITLALNKVELVDQEVLSDWNSRLRSWGYEPLFCSVDSKMGLDTLASVLRDQTTVILGPSGVGKSSLINALRNKPNSHDEADNWFDPIMGS
KWFEDQRVGEVSTRNGRGKHTTRNVSLLPLGGGGYVADTPGFSQPSLLKVTKQSLAQYFPEIRTVLSVNEPAKCTFKDCLHVGEPGCIVKGDWERYPLYF
QLLDEIKIREEFQLRTFGTKREDNVRYKAGDMGVQQEEPRLEPKKHRRQSRKRINQSILDELNELANDEDLFDDPVLRAHKNGNF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67440 EMB1688 embryo defective 1688, Minichr... Potri.016G023500
[exp]
0 1
AT2G20710 Tetratricopeptide repeat (TPR)... Potri.016G063300
[exp]
5.29 0.8600
AT3G18640 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G061100
[exp]
11.48 0.8308
AT1G08060 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS ... Potri.005G010133
[exp]
11.83 0.8262
AT3G12770 MEF22 mitochondrial editing factor ... Potri.008G173500
[exp]
14.38 0.8242
AT3G42170 BED zinc finger ;hAT family di... Potri.004G126740
[exp]
16.61 0.8323
AT5G43990 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-dom... Potri.014G192500
[exp]
18.38 0.8200
AT1G12580 PEPKR1 phosphoenolpyruvate carboxylas... Potri.012G134600
[exp]
18.49 0.8149 Pt-CDPK5.3
AT3G62330 Zinc knuckle (CCHC-type) famil... Potri.014G118100
[exp]
22.00 0.8227
AT1G55590 RNI-like superfamily protein (... Potri.011G169800
[exp]
27.11 0.7752
AT1G54380 spliceosome protein-related (.... Potri.007G124150
[exp]
27.27 0.8248

Potri.016G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.