Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56860 347 / 3e-115 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G41060 334 / 2e-110 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G15010 202 / 5e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22090 142 / 3e-38 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 128 / 9e-32 RNA recognition motif (RRM)-containing protein (.1) AT2G22100 122 / 1e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 85 / 2e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G53680 80 / 2e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G76460 81 / 7e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 79 / 4e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G025600 [exp] 493 / 3e-172 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G220600 [exp] 240 / 1e-73 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.005G081600 [exp] 226 / 2e-69 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 208 / 6e-62 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 196 / 5e-58 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 193 / 5e-57 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 167 / 2e-47 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G190900 [exp] 166 / 4e-47 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 90 / 5e-19 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043016 [exp] 395 / 1e-133 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10032516 [exp] 379 / 3e-128 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10025418 [exp] 197 / 4e-58 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 192 / 3e-56 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 164 / 5e-46 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 158 / 7e-42 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 82 / 6e-17 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 81 / 4e-16 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036503 [exp] 78 / 6e-16 AT3G54770 156 / 5e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041423 [exp] 78 / 9e-16 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.016G023800.1 pacid=42808921 polypeptide=Potri.016G023800.1.p locus=Potri.016G023800 ID=Potri.016G023800.1.v4.1 annot-version=v4.1 ATGGCTAAAAAACGAAAGCACGACGCCAAATCCACCGAGCCAGCGGAAGAGCCGCCGAAGAAGCAGCAACAACAAGAACCGCCAAAAGAAGAGCTCCAAG AAGAGCAAAACGAAGAAGAAGTAGAAGAAGTTGAAGAGGAGGAAGAAGAAGAATACGAAGAAGTCGAAGAGGAAGAAGAAAACGAAGATGAAGCTGATGA AGAAAACAATCAAAACGCTCAGATCTCAGCTGGGGAGATTCAAAACGACGACGAAGATGAAGATGAGGAGCCGGTTGAGAAACTTCTTGAACCGTTTGGA AAAGACCAGCTGATTAATTTACTTCGGGAAGCAGCGGATGCTCACCGGGACGTTGCGGAGAAAATCCGGCAAGTGGCTGACCAAGATCCAGTTCATCGGA AGATTTTTGTTCATGGGCTTGGATGGGATACGAACGCTGAGGCTTTGATGAGTGCGTTTAAGCCTTATGGAGAGATTGAGGATTGTAAAGCTGTGTGCGA TAAGGTTTCGGGGAAATCAAAGGGGTATGGGTTTATTTTGTTTAAGAGAAGGAGTGGGGCACGGAAGGCGCTGAAGGAACCGCAGAAGAAGATAGGGAAT AGGATGACAGCTTGTCAATTGGCGTCTATTGGTCCGGTTCCACAGTCGAGTGGTGGCCAGGCTGGGCCTGTTGCTGCGGCAGCGCAAGCGCAGCAGCCAG TTTCGGAGTATACGCTGAGGAAGATTTATGTGAGTAACGTGGCGGCAGATTTGGATCCGCAGAAGTTGTATAGTTACTTTTCGGAGTTTGGAGAGATCGA GGAAGGACCCTTAGGGCTTGATAAGGCGACTGGGAAGCCGAAAGGGTTTTGTTTGTTTGTTTATAAGAGTTCTGAGGGTGCTAAGAAAGCGTTGGAAGAG CCACATAAGAGTTTTGAAGGACATATGTTGCATTGTCAGAAGGCTATAGATGGGCCGAAACCAGGGAAAGCTCAGAAACAACCGCAGCAACATCATAATT TGCAAAGCTCGCATTACCAGAGGAATGATGGTGGTGGTTATGTTGGTGGTGGCAGTCGCGGTGGTCATTTAATGGCGCCGGCTGCTTCTGGAGCTGGGAT TGGGTTTAATCAGGGTGCTGCTGGTCCTGCCCTGAACCCTGCACTTGGACAGGCACTGACCGCATTGCTTGCAACTCAGGGTGCTGGATTGGGGGGGCTG ACTAATTTGCTTGGGACTTTGGGGTCTGCTGCAGCTGTGAATCAGGGTGGTTTATCTGGTGCAGGTCATGGAATGCAGGGTGCCTATGGGAACCAGGCGA GCATAAGTCCGGGAGTGATGGGAACTTATGCGAATCAGGGAGCTATGCAGGGTGGATATCCAAACCAGCAGACGGGACAGGGTGGTTCTGGGAGAGGACA ACATGGGCAATATGCTCCTTATATGGGTCACTAG
AA sequence Show only first row Show all	>Potri.016G023800.1 pacid=42808921 polypeptide=Potri.016G023800.1.p locus=Potri.016G023800 ID=Potri.016G023800.1.v4.1 annot-version=v4.1 MAKKRKHDAKSTEPAEEPPKKQQQQEPPKEELQEEQNEEEVEEVEEEEEEEYEEVEEEEENEDEADEENNQNAQISAGEIQNDDEDEDEEPVEKLLEPFG KDQLINLLREAADAHRDVAEKIRQVADQDPVHRKIFVHGLGWDTNAEALMSAFKPYGEIEDCKAVCDKVSGKSKGYGFILFKRRSGARKALKEPQKKIGN RMTACQLASIGPVPQSSGGQAGPVAAAAQAQQPVSEYTLRKIYVSNVAADLDPQKLYSYFSEFGEIEEGPLGLDKATGKPKGFCLFVYKSSEGAKKALEE PHKSFEGHMLHCQKAIDGPKPGKAQKQPQQHHNLQSSHYQRNDGGGYVGGGSRGGHLMAPAASGAGIGFNQGAAGPALNPALGQALTALLATQGAGLGGL TNLLGTLGSAAAVNQGGLSGAGHGMQGAYGNQASISPGVMGTYANQGAMQGGYPNQQTGQGGSGRGQHGQYAPYMGH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.016G023800 [exp]	0	1
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.002G139700 [exp]	3.16	0.7934
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	3.31	0.8405
AT1G17520	MYB		Homeodomain-like/winged-helix ...		Potri.006G147400 [exp]	4.89	0.7984
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.006G009100 [exp]	5.09	0.7877
AT4G01000			Ubiquitin-like superfamily pro...		Potri.002G170200 [exp]	6.00	0.8009
AT4G21660			proline-rich spliceosome-assoc...		Potri.004G039000 [exp]	9.48	0.8181
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.001G196500 [exp]	9.53	0.7992
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	15.58	0.7949
AT5G57580			Calmodulin-binding protein (.1...		Potri.018G095300 [exp]	16.43	0.7832
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.001G140300 [exp]	16.52	0.8080

Compare expression of checked genes

Potri.016G023800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.