Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27040 1246 / 0 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21150 1171 / 0 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT5G21030 1014 / 0 PAZ domain-containing protein / piwi domain-containing protein (.1) AT2G32940 935 / 0 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT1G48410 505 / 2e-163 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 498 / 4e-161 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 491 / 2e-158 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 378 / 7e-116 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G31280 313 / 5e-92 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 313 / 9e-91 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G025900 [exp] 1680 / 0 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.001G219700 [exp] 1385 / 0 AT2G27040 1403 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.008G010500 [exp] 1304 / 0 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.014G159400 [exp] 1095 / 0 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Potri.015G029000 [exp] 518 / 6e-168 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 509 / 1e-164 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.010G081300 [exp] 491 / 9e-159 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 490 / 3e-158 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.009G001500 [exp] 483 / 8e-156 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025537 [exp] 1144 / 0 AT5G21030 1234 / 0.0 PAZ domain-containing protein / piwi domain-containing protein (.1) Lus10026750 [exp] 1121 / 0 AT5G21150 1253 / 0.0 ARGONAUTE 9, Argonaute family protein (.1) Lus10015155 [exp] 1052 / 0 AT2G32940 1069 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10035331 [exp] 1043 / 0 AT2G32940 1080 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10029989 [exp] 939 / 0 AT2G32940 947 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10031331 [exp] 506 / 3e-163 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 497 / 2e-162 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10000295 [exp] 481 / 4e-162 AT2G27040 514 / 2e-175 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Lus10017983 [exp] 504 / 2e-161 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 493 / 6e-159 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0219 [poplar] [flax] RNase_H PF02171 [poplar] [flax] Piwi Piwi domain CL0219 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0219 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute CL0219 [poplar] [flax] PF16487 [poplar] [flax] ArgoMid Mid domain of argonaute CL0219 [poplar] [flax] PF16488 [poplar] [flax] ArgoL2 Argonaute linker 2 domain
Representative CDS sequence Show only first row Show all	>Potri.016G024200.1 pacid=42810552 polypeptide=Potri.016G024200.1.p locus=Potri.016G024200 ID=Potri.016G024200.1.v4.1 annot-version=v4.1 ATGGAGTCTAATGAAGAGCCAGAGGCCCTTGCTCCTCCACCTGATGCCCTCCCTCCTCCTCCACCTGAGATACCACCAAATGTAGTTCCTGTTCAATTGA CAACAGGCACTTTTCCTGAGGAAACAAAAAAGACATCAAAATTAAAACGTTCCCCGATTACCAGGCGCGGAGTTGGGTCTAGAGGGCAAAAAATACAACT AGTCACAAATCATTTCAAAGTTTCTATCTCTAATACTGGTGGCCACTTTTTTCACTACAGTGTTTCCTTATATTATGAGGACGGTCGCCCTGTCGATGCA AAGGGCATTGGGAGAAGATTAATTGACAAAGTTCATGAGACTTATGGGTCAGATCTTGCCGGGAAGGACTTTGCATACGATGGAGAGAAGAGCTTATTCA CAATTGGTGCTCTGCCACGAAACAAAATGGAATTCACTGTTTTGCTTGATAGTTTCTCATCAAATAGGAATTCTGGAAATGGAAGCCCTGTTGGCAATGG AAGTCCTAATGAGACCGATAAAAAGAGGATGAGGCGGGCATTCCAGTCCAAAACATTTAAAGTGGAGATGAGTTTTGCTGCCAAAATCCCTATGCAAGCT ATTGCAGCTGCTTTGCGTGGTCAAGAATCGGAAAACTCTCAGGAAGCCTTAAGAGTCTTGGACATCATTTTAAGACAGCATGCAGCTAAACAGGGTTGCC TTCTTGTTCGCCAGTCATTCTTTCACAATAATCCAAAGAACTATGTTGATCTGGGAGGAGGAGTCCTTGGATGCCGAGGATTTCATTCGAGCTTTCGAGC CTTGCAGGGTGGATTATCCCTAAATATGGATGGTTCGACTACAACGATAATACAGCCTGGGCCACTTATTGACTTTCTCATAGCCAACCAGAATGTGTCA AACCCTTTTCAGATCGACTGGGCAAAGGCAAAGCGGACAATGAAAAATTTGAGGATAAAGGTGTCACCTACCAATCAAGAGTACAGAATCACTGGCCTAA GTGAAAATAGTTGCAAAGAGCAAATGTTTTCGCTGAAATCAAGAGCAGCTGATGGAAATGATGTTGAAAGTTTTGACATTACAGTTTATGATTATTTTGT TAATCATCGCAGCATAGATTTACGTTACTCTGGAGATTTGCCATGCATCAATGTTGGCAAGCCTAAAAGGCCTACTTACATTCCCGTCGAGCTTTGTTCA CTGCTTTCTTTGCAACGCTACACAAAGGCACTGACTGTCCATCAGAGATCGCAGTTGGTAGAAAAATCAAGACAAAAACCCCAAGAAAAGATTAGGATCT TAGCTGATGTAATGAAAAGCAACAACTATGCTGCAGAACCAATGCTGCGTTCTTGTGGCATCACCATCAGCAGCCAGTTTACTCAAGTTCAAGGCCGTGT GCTTCCTGCTCCAAAGTTAAAAGCAGGAAATGGTGAGGATGTTATTCCAAGAAATGGGCGGTGGAATTTTAATAATAAGAAATTTTTTGAACCTTCTAAA ATTGAAAACTGGGCAGTGGTGAACTTTTCCGCCCGTTGTGATGTGCGTGGTCTAGTAAGAGATTTGATAAAATTTGGAGAAATGAAAGGGATTCTCATAA GTGACCCGATGGATGTTCTTGAAGAGAATGCTCAGTTTCGACGGGCACCACCTCCTGTTCGAGTGGATAAGATGTTTGAACAGATACAGACAGCTTTTCC AGATGCTCCTCCTCGCTTTCTTGTGTGTCTTCTTCCTGATAGGAAGAACTCTGACATATATGGTCCTTGGAAACGAAAGAATCTTGCAGAATATGGAATT TTCAACCAATGCCTGGCACCCACTAGAGTTAATGATCAGTATATATTGAATGTTCTCCTGAAGATAAATGCTAAGCTCGGTGGTTTGAATTCTTTGTTGG CTATGGAGCAATCACGAAACATCCCTTTTGTTTCAAAAGTTCCTACAATAATATTTGGGATGGATGTATCACATGGCTCGCCTGGCCAGTCTGACATCCC ATCCATTGCTGCGGTTGTCAGTTCTAGAAACTGGCCTCTACTTTCTCGTTATAGAGCTTCTGTGCGTAGTCAGTCACCAAAAGTTGAGATGGTAGATTCT CTTTTTAAACTAACAGCAGATAAGAAAGATGATTGTGGGATTGTTAGGGAATTGTTGTTAGACTACTATAAGAGTTCTGGCCAAACAAAGCCAGCTCAGA TAATCATATTCAGGGATGGAGTTAGTGAGTCGCAGTTTAATCAAGTCCTCAACATCGAGCTGGATCAAATCATTGAGGCCTGCAAGTTCCTTGATGAAAG CTGGTCACCCAAGTTCACTGTAATTGTTGCACAGAAAAATCACCACACTAAATTCTTCCAAGATGGATCTCCAGACAATGTTCCTCCTGGAACTGTTATT GATAATGCTGTTTGTCACCCACAAACCTATGATTTCTACATGTGTGCCCATGCAGGGATGATAGGAACAACTAGGCCAACACATTATCATGTTCTTTTAG ATGAGATTGGCTTTTCAGCTGATGATCTACAGGAGTTGATTCACTCTTTGTCTTATGTGTACCAAAGAAGCACAACAGCAATATCCCTAGTTGCTCCAGT CCGGTACGCACACTTGGCAGCAACTCAGATTTCACAATTCTTGAAGTTTGATGACATGTCAGAGACATCTTCGAGCCATGGAGGTCTGACTTCTGCTGGG CAAGCACCTGTGCCTGAGCTTCCTGAGCTACACCACAATGTCCGCAGCTCTATGTTTTTCTGCTGA
AA sequence Show only first row Show all	>Potri.016G024200.1 pacid=42810552 polypeptide=Potri.016G024200.1.p locus=Potri.016G024200 ID=Potri.016G024200.1.v4.1 annot-version=v4.1 MESNEEPEALAPPPDALPPPPPEIPPNVVPVQLTTGTFPEETKKTSKLKRSPITRRGVGSRGQKIQLVTNHFKVSISNTGGHFFHYSVSLYYEDGRPVDA KGIGRRLIDKVHETYGSDLAGKDFAYDGEKSLFTIGALPRNKMEFTVLLDSFSSNRNSGNGSPVGNGSPNETDKKRMRRAFQSKTFKVEMSFAAKIPMQA IAAALRGQESENSQEALRVLDIILRQHAAKQGCLLVRQSFFHNNPKNYVDLGGGVLGCRGFHSSFRALQGGLSLNMDGSTTTIIQPGPLIDFLIANQNVS NPFQIDWAKAKRTMKNLRIKVSPTNQEYRITGLSENSCKEQMFSLKSRAADGNDVESFDITVYDYFVNHRSIDLRYSGDLPCINVGKPKRPTYIPVELCS LLSLQRYTKALTVHQRSQLVEKSRQKPQEKIRILADVMKSNNYAAEPMLRSCGITISSQFTQVQGRVLPAPKLKAGNGEDVIPRNGRWNFNNKKFFEPSK IENWAVVNFSARCDVRGLVRDLIKFGEMKGILISDPMDVLEENAQFRRAPPPVRVDKMFEQIQTAFPDAPPRFLVCLLPDRKNSDIYGPWKRKNLAEYGI FNQCLAPTRVNDQYILNVLLKINAKLGGLNSLLAMEQSRNIPFVSKVPTIIFGMDVSHGSPGQSDIPSIAAVVSSRNWPLLSRYRASVRSQSPKVEMVDS LFKLTADKKDDCGIVRELLLDYYKSSGQTKPAQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQDGSPDNVPPGTVI DNAVCHPQTYDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELIHSLSYVYQRSTTAISLVAPVRYAHLAATQISQFLKFDDMSETSSSHGGLTSAG QAPVPELPELHHNVRSSMFFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.016G024200 [exp]	0	1
AT3G08840			D-alanine--D-alanine ligase fa...		Potri.006G106000 [exp]	5.38	0.7669
AT3G17340			ARM repeat superfamily protein...		Potri.010G152700 [exp]	5.65	0.7791
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Potri.011G095100 [exp]	5.65	0.8290	ATGSL04.1
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	9.59	0.8074
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Potri.006G188800 [exp]	11.74	0.8105	DCL905
AT5G66600			Protein of unknown function, D...		Potri.007G033100 [exp]	11.95	0.7809
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	12.72	0.7868
AT5G57130			Clp amino terminal domain-cont...		Potri.018G140900 [exp]	13.78	0.8281
AT3G22550			Protein of unknown function (D...		Potri.010G085700 [exp]	13.85	0.7714
AT1G61600			Protein of unknown function (D...		Potri.004G106100 [exp]	16.58	0.8052

Compare expression of checked genes

Potri.016G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.