Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13750 588 / 0 ZIFL1 zinc induced facilitator-like 1 (.1.2.3) AT3G43790 582 / 0 ZIFL2 zinc induced facilitator-like 2 (.1.2.3) AT5G13740 566 / 0 ZIF1 zinc induced facilitator 1 (.1) AT5G13940 76 / 2e-14 aminopeptidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G026200 [exp] 869 / 0 AT5G13750 572 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.008G010600 [exp] 630 / 0 AT5G13750 630 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Potri.010G248401 [exp] 163 / 8e-48 AT5G13750 144 / 2e-41 zinc induced facilitator-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034847 [exp] 633 / 0 AT5G13750 664 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037341 [exp] 631 / 0 AT5G13750 640 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033392 [exp] 630 / 0 AT5G13750 659 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10033391 [exp] 615 / 0 AT5G13750 642 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10037425 [exp] 605 / 0 AT3G43790 687 / 0.0 zinc induced facilitator-like 2 (.1.2.3) Lus10033338 [exp] 601 / 0 AT5G13750 646 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034846 [exp] 600 / 0 AT5G13750 600 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10035766 [exp] 600 / 0 AT5G13750 622 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10034794 [exp] 597 / 0 AT5G13750 645 / 0.0 zinc induced facilitator-like 1 (.1.2.3) Lus10000256 [exp] 319 / 2e-107 AT5G13750 318 / 3e-108 zinc induced facilitator-like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.016G024400.2 pacid=42810219 polypeptide=Potri.016G024400.2.p locus=Potri.016G024400 ID=Potri.016G024400.2.v4.1 annot-version=v4.1 ATGGATGAGAATGGGATTGGAGAGTCTTTGTTGAGGAAGAACAAGTATTATGAGGACTGCCCAGGTTGCAAGATTGAACTTTCCAAAGAAACCAACACTG GTGTTCCTTTTAAGTATTTGCTCTATGTCTGGATTGTTGTCCTTTGTGCAGCTTTGCCTATATCATCTCTCTTTCCTTTCCTCTATTTCATGATAAGGGA CTTCCATATTGCAAAAAGAGAGGAGGACATTGGCTACTATGCTGGTTATGTGGGATCTGCTTTTATGTTTGGAAGAGCTTTAACTTCTGTGCTCTGGGGA ATGATTGCTGATCGATATGGTCGAAAACCAGTCATAATATTTGGCACAGTATCAGTGGTTATTTTCAACACCCTTTTCGGCCTTAGCACAAGCTTTTGGA TGGCAATTTCTACGAGGTTTCTTCTTGGAAGTCTGTGTGGCATACTTGGTCCAATGAGGGCATATGCTTCAGAAGTTTGCCGTAAAGAATATCAAGCTTT AGGAATGTCAATTATCAGCACCTCGTGGGGCATTGGATTAGTTATTGGTCCCGCACTTGGAGGTTTTCTTGCTCAGCCTGCAGAGAAATTTCCAAATATA TTTTCTTCTGATTCTCTTTTTGGGAGGTTTCCGTACCTGTTACCTTGCCTTCTGATATCAATCTTTTCTGTCGGTGTATTGGTTGTTTGTTGTTTGCTTC CGGAGACGATACACAACCATAAAGGAAATGATGAAGAGTGCAATGATTCTGATGCACTTGGGGCCACCACATTTGAGTCCAACTCTTCTCAGAAAAGCCT GCTGAAAAATTGGCCCTTAATATCATCTATTATCGTGTACTGTGTGTTCCAACTTCATGACATGGCATATGCAGAGATTTTCTCATTATGGGCTGTTAGT CCTAGGAAGAATGGGGGATTGAGCTTTTCCACTGCAGATGTCGGTGAAGTTCTTGCATTTTCAGGCTTTGGACTGCTACTCTTTCAGCTATTTATATACC CAGTGGCTGAGAGAAATTTTGGACCGGTCATGGTATCTCGCCTAGGAGCAGTCTTGACCATACCGTTGCTATCTAGTTACCCTTTTATAGCTCTGCTAAA AGGCCTCACCCTCATGCTACTGATCAACTGCGCATCCATCCTGAAGAATGTGCTCTCTGTATCAATCACAACAGGATTGTTCCTTCTGCAAAATAGATCA GTGGCACAACAACAAAGGGGTGCCGCAAATGGAATTTCAATGTCTGCCATGTCCCTTTTCAAAGCAATTGGTCCTGCAGCTGGAGGTTCCCTCTTCTCTT GGGCACAAAAGCGTCAGAGTGCATTTTTTCTCCCAGGTGATCAAATCGTCTTCTTCTTCCTTAACATGATCGAGGTGATTGGACTGTTCTTGACATTCAA ACCATTTCTAGCTCTTCCTGATGACAACATTTCTTAG
AA sequence Show only first row Show all	>Potri.016G024400.2 pacid=42810219 polypeptide=Potri.016G024400.2.p locus=Potri.016G024400 ID=Potri.016G024400.2.v4.1 annot-version=v4.1 MDENGIGESLLRKNKYYEDCPGCKIELSKETNTGVPFKYLLYVWIVVLCAALPISSLFPFLYFMIRDFHIAKREEDIGYYAGYVGSAFMFGRALTSVLWG MIADRYGRKPVIIFGTVSVVIFNTLFGLSTSFWMAISTRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSWGIGLVIGPALGGFLAQPAEKFPNI FSSDSLFGRFPYLLPCLLISIFSVGVLVVCCLLPETIHNHKGNDEECNDSDALGATTFESNSSQKSLLKNWPLISSIIVYCVFQLHDMAYAEIFSLWAVS PRKNGGLSFSTADVGEVLAFSGFGLLLFQLFIYPVAERNFGPVMVSRLGAVLTIPLLSSYPFIALLKGLTLMLLINCASILKNVLSVSITTGLFLLQNRS VAQQQRGAANGISMSAMSLFKAIGPAAGGSLFSWAQKRQSAFFLPGDQIVFFFLNMIEVIGLFLTFKPFLALPDDNIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.016G024400 [exp]	0	1
AT1G70950			TPX2 (targeting protein for Xk...		Potri.008G129300 [exp]	4.24	0.7075
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.012G079500 [exp]	9.69	0.7202
AT5G62260	AT-hook		AT hook motif DNA-binding fami...		Potri.012G129500 [exp]	12.20	0.7693
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Potri.010G199500 [exp]	13.96	0.7122
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Potri.010G225200 [exp]	17.97	0.6594
AT3G58480			calmodulin-binding family prot...		Potri.015G125950 [exp]	29.54	0.6913
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	31.14	0.6892
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.008G007600 [exp]	35.66	0.6748
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G111200 [exp]	36.53	0.7108
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117300 [exp]	38.34	0.7016

Compare expression of checked genes

Potri.016G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.