Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05080 373 / 8e-132 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2) AT2G02760 116 / 2e-32 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 116 / 3e-32 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT4G27960 108 / 2e-29 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G41700 108 / 3e-29 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT1G78870 108 / 3e-29 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT5G62540 108 / 3e-29 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT1G64230 107 / 5e-29 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 107 / 6e-29 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT1G16890 107 / 9e-29 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G026900 [exp] 495 / 6e-180 AT5G05080 376 / 4e-133 ubiquitin-conjugating enzyme 22 (.1.2) Potri.013G064400 [exp] 117 / 8e-33 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G064000 [exp] 115 / 4e-32 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 115 / 5e-32 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.011G168200 [exp] 109 / 1e-29 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.003G136200 [exp] 109 / 1e-29 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 108 / 1e-29 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.006G110200 [exp] 108 / 1e-29 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 108 / 2e-29 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038982 [exp] 342 / 1e-117 AT5G05080 310 / 1e-105 ubiquitin-conjugating enzyme 22 (.1.2) Lus10027282 [exp] 312 / 2e-106 AT5G05080 284 / 1e-95 ubiquitin-conjugating enzyme 22 (.1.2) Lus10012110 [exp] 278 / 2e-94 AT5G05080 260 / 5e-88 ubiquitin-conjugating enzyme 22 (.1.2) Lus10010433 [exp] 278 / 3e-94 AT5G05080 253 / 6e-85 ubiquitin-conjugating enzyme 22 (.1.2) Lus10036727 [exp] 118 / 6e-33 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 118 / 6e-33 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 116 / 3e-32 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10013263 [exp] 113 / 5e-31 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10033611 [exp] 110 / 7e-30 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017654 [exp] 110 / 7e-30 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.016G024800.5 pacid=42810636 polypeptide=Potri.016G024800.5.p locus=Potri.016G024800 ID=Potri.016G024800.5.v4.1 annot-version=v4.1 ATGGCCATGGCAACCAATGAAAATCTTCCACCCAATGTAATTAAACAACTTGCAAAGGAACTGAAGAATCTTGATGAATCACCACCTGAAGGAATTCAAG TAGGAGTAAATGATGATGATTTTTCGATCATATATGCTGATATTGAAGGCCCAGCTGGGACTCCATATGAAAATGGCGTTTTCCGCATGAAGCTGTTACT ATCTCATGATTTTCCACACTCTCCTCCTAAAGGTTACTTCCTGACTAGGATTTTCCATCCCAATATTGCTTCTAATGGTGAGATTTGTGTTAATACGCTT AAGAAGGACTGGAATCCAAGTCTTGGGTTACGCCATGTTCTCACTGTAGTGAGGTGTTTATTAATTGAACCATTTCCAGAGTCAGCTTTGAATGAACAGG CTGGCAAGATGCTCCTCGAAAATTATGAAGAGTATGCCAGACATGCCAGGATATATACTGGTATCCATGCGAAGCCGAAACCTAAGTTCAAGACTGGAGC CATTTCAGAATCAACTACGGCTCTGAATGTTGACCAAAGCATTGGTGACCAAAAGAGTGTAGCTGTTGGTGCTGTCGTACCGTTGCAATCCCCACTGGCC CCTTGTACAACAGCGAGCAAAGTAGGAAATAGTCAGGATCAACCAGCTGCTGTAGGTCCAACGCACGAGACAGGAATGAGTGGATCTGTGGCTGCACCAA CACCCAGTACCCTGAAGAAAGATGTTGGACTTACAAAAGTTCAGGCAGGCAAGAAGAAAATGGATGCAAGAAAAAAGAGCTTAAAGAGATTATGA
AA sequence Show only first row Show all	>Potri.016G024800.5 pacid=42810636 polypeptide=Potri.016G024800.5.p locus=Potri.016G024800 ID=Potri.016G024800.5.v4.1 annot-version=v4.1 MAMATNENLPPNVIKQLAKELKNLDESPPEGIQVGVNDDDFSIIYADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTRIFHPNIASNGEICVNTL KKDWNPSLGLRHVLTVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFKTGAISESTTALNVDQSIGDQKSVAVGAVVPLQSPLA PCTTASKVGNSQDQPAAVGPTHETGMSGSVAAPTPSTLKKDVGLTKVQAGKKKMDARKKSLKRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Potri.016G024800 [exp]	0	1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G156900 [exp]	12.72	0.8240
AT3G20560		ATPDI12, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.001G419300 [exp]	17.26	0.8226
AT5G42330			unknown protein		Potri.005G250800 [exp]	42.00	0.7793
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	44.19	0.7839
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.016G119800 [exp]	49.74	0.7384
AT5G07960			unknown protein		Potri.015G056300 [exp]	87.20	0.7589
AT3G57200			unknown protein		Potri.016G041900 [exp]	89.16	0.7494
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.012G142400 [exp]	92.67	0.7593
AT3G58650			unknown protein		Potri.010G140900 [exp]	102.14	0.7337
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.008G140200 [exp]	107.77	0.7332

Compare expression of checked genes

Potri.016G024800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.