Plant FIBer expression Database

AT103.1 (Potri.016G025000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol AT103.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56940 670 / 0 CRD1, CHL27, ACSF, AT103 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G027300
[exp]
749 / 0 AT3G56940 700 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035398
[exp]
665 / 0 AT3G56940 679 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
Lus10031000
[exp]
664 / 0 AT3G56940 681 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0044 Ferritin PF02915 Rubrerythrin Rubrerythrin
Representative CDS sequence
>Potri.016G025000.2 pacid=42809133 polypeptide=Potri.016G025000.2.p locus=Potri.016G025000 ID=Potri.016G025000.2.v4.1 annot-version=v4.1
ATGGCTGCAGAGATGGCTTTAGTAAAACCCATCTCCAAATTTAGCTCCACACCGAAATTTGGAAACCCAAGAAGTTTCTCGTACCCCAAATTCAGTACCA
TCAAGATGTCAGCTACTGCACAGACAACAAGAAGTCCAAAGCCAAAGAAGAAAGGTAACAAAGGTGAAATCAAAGAGACCCTTTTGGCACCTAGGTTCTA
CACCACTGATTTTGATGAAATGGAGACCCTTTTCAATACTGACATTAACAAGAACTTGAACCAGTCTGAGTTTGAAGCACTTCTGCAAGAATTCAAGACT
GACTACAACCAGACTCACTTTGTGAGAAACAAGGAGTTCAAGGAAGCAGCTGACAAGATGCAAGGACCATTGAGACAGATTTTTGTTGAGTTCTTGGAGA
GGTCTTGCACTGCTGAGTTCTCTGGCTTCCTTCTCTACAAAGAGCTTGGAAGGAGACTCAAGAAAACCAATCCAGTGGTAGCAGAGATTTTCTCCCTCAT
GTCCAGGGATGAAGCCAGGCATGCTGGATTTTTGAACAAGGGTTTGTCTGATTTCAATCTGGCCTTGGACTTGGGGTTCCTAACAAAGGCTAGGAAATAC
ACATTTTTCAAGCCAAAGTTCATTTTCTATGCTACATATTTGTCTGAGAAAATTGGGTACTGGAGATACATAACAATTTACAGACATCTCATGGAAAATC
CTGACTACCAGTGTTATCCTATTTTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAACAGACATGGTGATTTCTTCTCCGCATTGATGAAAGCACAGCC
TCAATTCCTCAACGATTGGAAGGCAAAGCTGTGGTCACGTTTCTTTTGCCTATCGGTATATGTGACAATGTACCTTAACGATTGCCAGCGAACTGCTTTC
TATGAAGGCATTGGGCTCAATACCAAAGAATTTGACATGCATGTGATTATTGAGACAAACCGCACAACAGCTAGAATCTTCCCAGCTGTGCTGGATGTTG
AGAACCCAGAGTTCAAGAGGAAGTTGGACAGAATGGTGGAAATTAACCAGAAGCTGATAGCTGTTAATGAGAGCCAAGACAATTCCTTTGTCAAGAACTT
CAAGAGAATTCCCCTTATTGCAGCATTAGCTTCTGAGCTCTTGGCTGCATATCTAATGCCACCAATCGAGTCTGGATCTGTTGATTTCGCAGAGTTTGAA
CCACAACTTGTTTACTAG
AA sequence
>Potri.016G025000.2 pacid=42809133 polypeptide=Potri.016G025000.2.p locus=Potri.016G025000 ID=Potri.016G025000.2.v4.1 annot-version=v4.1
MAAEMALVKPISKFSSTPKFGNPRSFSYPKFSTIKMSATAQTTRSPKPKKKGNKGEIKETLLAPRFYTTDFDEMETLFNTDINKNLNQSEFEALLQEFKT
DYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKY
TFFKPKFIFYATYLSEKIGYWRYITIYRHLMENPDYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAF
YEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINQKLIAVNESQDNSFVKNFKRIPLIAALASELLAAYLMPPIESGSVDFAEFE
PQLVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Potri.016G025000
[exp]
0 1 AT103.1
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-p... Potri.015G062200
[exp]
2.23 0.9831 CAB4.1
AT3G08940 LHCB4.2 light harvesting complex photo... Potri.016G115200
[exp]
3.46 0.9787 Pt-LHCB4.2
AT3G54890 LHCA1 photosystem I light harvesting... Potri.010G221100
[exp]
3.74 0.9817 1
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Potri.006G027300
[exp]
5.00 0.9766 Pt-AT103.2
AT3G08940 LHCB4.2 light harvesting complex photo... Potri.006G099500
[exp]
5.91 0.9756 LHCB4.3,Lhcb4
AT1G55670 PSAG photosystem I subunit G (.1) Potri.011G168700
[exp]
6.00 0.9781 Pt-PSAG.2
AT5G67150 HXXXD-type acyl-transferase fa... Potri.003G057200
[exp]
6.92 0.9757
AT3G59400 GUN4 GENOMES UNCOUPLED 4, enzyme bi... Potri.007G128200
[exp]
7.41 0.9718 GUN4.2
AT1G23740 AOR alkenal/one oxidoreductase, Ox... Potri.016G136100
[exp]
9.79 0.9698
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Potri.016G021300
[exp]
11.22 0.9681

Potri.016G025000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.