Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04940 561 / 0 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 555 / 0 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT1G17770 372 / 2e-119 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 353 / 2e-111 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G35160 314 / 2e-96 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 292 / 3e-88 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT4G13460 275 / 5e-83 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 268 / 2e-80 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G13960 240 / 4e-70 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G05900 143 / 6e-38 SUVH10, SDG11 SU\(VAR\)3-9 HOMOLOG 10, SET domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G027600 [exp] 1055 / 0 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 614 / 0 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 607 / 0 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G083100 [exp] 330 / 7e-101 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.008G173100 [exp] 287 / 3e-87 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 285 / 4e-86 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.014G143900 [exp] 265 / 4e-79 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.002G237950 [exp] 260 / 4e-77 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 214 / 1e-59 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026137 [exp] 577 / 0 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 565 / 0 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 556 / 0 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10011011 [exp] 294 / 6e-87 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 293 / 1e-86 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 287 / 4e-86 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10023714 [exp] 282 / 2e-85 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10041515 [exp] 268 / 5e-80 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 265 / 1e-78 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 233 / 1e-66 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain CL0178 [poplar] [flax] PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.016G025300.4 pacid=42809295 polypeptide=Potri.016G025300.4.p locus=Potri.016G025300 ID=Potri.016G025300.4.v4.1 annot-version=v4.1 ATGGAAGAATCACCAGGTGAAGGCTCGATAGACAAGTCCAGGGTTTTGAATGTAAAGCCCTTGCGGACTCTTACTCCAGTATTCTCCGCACCACCAAACT CTAATTCTTTTCCTCAAGGTTCTGCACCTTTCGTTTGTGTTCCACCAGCAGGTCCTTTCCCACCTGGAGTTTCTCCTTTCTTTCCATTTTCCGGTATACC AAATCAATCTGTCCCTTCTGGTGACCACACCCCAATATCATCAGCAGTTCCAATCAATTCATTTCGGTCACCTGAGCCTCCATCTGCAAGGGCAGCAAAT GGAAATGCTGGGTCATCAAGGAGGGCTAACAGAAACAACAGGGTTGTGGAAGAAGATGGGTACGGTGACAACCAAACTTGGAGTTCACAGAGTATATCTC AGAAGAGGACAAGAGGCAAAAAGGATAAAATTGCCTCTCCTGATGTTGACATGGATGTGATGGTAGAAAATATTTACCAATCATATAACCTCGTGGAATT TGAAGAAGCACGACGATATAATGGTGATAAAGATTCTGTAGGATGTGTACTCCTGGTTTTCAATCTGCTCCGAAGACAAATCGTACAGCTTGAAGATTCA AAGGAAGCCACTGCAGGACAATCAAGGCGCCCTGACTTAAAAGCAGGCAATGTTTTGATGACCAAAGGAGTTCGGACTAATGCCAAGAAGAGAGTTGGAG CTGTACCCGGTGTTGAAATTGGAGATATTTTCTTTTTTAGAATGGAATTGTGCACCATTGGACTGCATGCTCCGATCATGGCTGGAATAGATTACATGTC AGTCAAGGTCAGTCAAGATGAAGAACCAATAGCTGTTAGCATTGTTTCATCTGGGGGATACGAGGATGATGTTGAGGAAGATGATGGCTTGATTTACTCT GGCCAGGGCAAAGAAATGGATCAGAAGCTTGAAAGGGGTAACCTTGCACTGGAGAAAAGCTTGCATCGTGGTAATGACATTAGAGTAACCAGGGGTATAA AGGATGTGGGAAATCCAACCGGAAAGGTATATGTGTATGACGGTCTATATAGAATCCAGGAGTCATGGGTGGAGAAAGGAAAGTCTGGTTCCAATGTTTT TAGATATAAGTTGGGTAGGTTACCTGGCCAGCCTGATGCATACAAAATGTGGAAAAAAATTCAGCAATGGAAGGATGGTATTATTCCTAGGATGGGGATT ATACTACCTGATCTTACTTCTGGGGCCGAAACTTTACCAGTTTCTCTTGTGAATGATGTTGATCATGAAAAGGGGCCTGCCTATTTCAATTATTCTCCTA CCCTAAAGTATTCAAAACCAGTACCGAGGGATCCTTTTGTTGGCTGTGCTTGCAATGGTGCTTGTCTTCCAGGAAACGAGAATTGTGATTGTGTTCAGAA AAATGGAGGCTATCTTCCTCATATTGTGAATGGGGTTATTGTGAGTCAAAAATCTGTGATATATGAGTGTGGTCCTCCCTGCCGGTGCCCTCCAACTTGC CGCAATCGTGTGTCCCAGGGTGGTCTAAGAGTTCGTTTGGAGGTGTTTAAAACTAAGGATAGAGGTTGGGGCTTAAGATCCTGGGATCCCATACGAGCTG GAGCATTTATATGTGTATATGCAGGAGAAGCTGTCGATGATTCTGAGGCACAAGAGCTTGCAGGTGAAAACGAAGATGATCACATTTTTGATGGTACCCG CATTTATCAGCCAGTGGAAGTTTTGCCTGGTGATTTAAATAATGCTCCAAACCTTCAATTTCCTCTTATAATAAATGCCAGAAATGCTGGGAATGTAGCT CGTTTTATAAATCACAGCTGCTCTCCAAATCTGTTCTGGCAGCCAGTTTTACGGGGAAATAGCAAGGAGTTTGATCTCCATATTGCATTTTATGCTATCA GACACGTTCCTCCTATGACAGAGTTGACATATAGTTATGGAATGGTACCACCTGAAAAAGCAGATCGTGGGAAGAAAAAATGCTTCTGTGGATCACCAAA GTGCAGAGGTTTTTTCTATTGA
AA sequence Show only first row Show all	>Potri.016G025300.4 pacid=42809295 polypeptide=Potri.016G025300.4.p locus=Potri.016G025300 ID=Potri.016G025300.4.v4.1 annot-version=v4.1 MEESPGEGSIDKSRVLNVKPLRTLTPVFSAPPNSNSFPQGSAPFVCVPPAGPFPPGVSPFFPFSGIPNQSVPSGDHTPISSAVPINSFRSPEPPSARAAN GNAGSSRRANRNNRVVEEDGYGDNQTWSSQSISQKRTRGKKDKIASPDVDMDVMVENIYQSYNLVEFEEARRYNGDKDSVGCVLLVFNLLRRQIVQLEDS KEATAGQSRRPDLKAGNVLMTKGVRTNAKKRVGAVPGVEIGDIFFFRMELCTIGLHAPIMAGIDYMSVKVSQDEEPIAVSIVSSGGYEDDVEEDDGLIYS GQGKEMDQKLERGNLALEKSLHRGNDIRVTRGIKDVGNPTGKVYVYDGLYRIQESWVEKGKSGSNVFRYKLGRLPGQPDAYKMWKKIQQWKDGIIPRMGI ILPDLTSGAETLPVSLVNDVDHEKGPAYFNYSPTLKYSKPVPRDPFVGCACNGACLPGNENCDCVQKNGGYLPHIVNGVIVSQKSVIYECGPPCRCPPTC RNRVSQGGLRVRLEVFKTKDRGWGLRSWDPIRAGAFICVYAGEAVDDSEAQELAGENEDDHIFDGTRIYQPVEVLPGDLNNAPNLQFPLIINARNAGNVA RFINHSCSPNLFWQPVLRGNSKEFDLHIAFYAIRHVPPMTELTYSYGMVPPEKADRGKKKCFCGSPKCRGFFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.016G025300 [exp]	0	1
AT4G15080			DHHC-type zinc finger family p...		Potri.016G018400 [exp]	2.82	0.8552
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	4.00	0.8605
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Potri.018G039500 [exp]	4.24	0.8576
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Potri.009G114900 [exp]	4.24	0.8491	CHB901,SWI3.4
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	4.24	0.8737	Pt-FHY3.2
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.001G266700 [exp]	6.48	0.8522
AT2G34730			myosin heavy chain-related (.1...		Potri.001G466800 [exp]	7.48	0.8313
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.009G017700 [exp]	8.83	0.7843
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.002G120200 [exp]	9.59	0.8252
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.005G071900 [exp]	10.95	0.8489

Compare expression of checked genes

Potri.016G025300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.