Plant FIBer expression Database

Potri.016G025500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10740 998 / 0 ATASD1, ARAF1, ARAF, ASD1 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
AT5G26120 937 / 0 ATASD2, ASD2 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 2, alpha-L-arabinofuranosidase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G027700
[exp]
1230 / 0 AT3G10740 999 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Potri.016G026532
[exp]
52 / 3e-08 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038988
[exp]
965 / 0 AT3G10740 972 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Lus10027276
[exp]
914 / 0 AT3G10740 922 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Lus10031008
[exp]
786 / 0 AT3G10740 783 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Lus10035405
[exp]
191 / 3e-56 AT3G10740 191 / 9e-57 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0369 GHD PF06964 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminal domain
Representative CDS sequence
>Potri.016G025500.1 pacid=42809314 polypeptide=Potri.016G025500.1.p locus=Potri.016G025500 ID=Potri.016G025500.1.v4.1 annot-version=v4.1
ATGGGTGAGAAGATGAGTAGTTGCAAGGCCTCTTGCAGTGTTCTTTTGGCGTGCTTCATTGTTGGTCTTTGTTCTGTGTGCCAATGTTCTGCTGCTGAAG
TTGATGCAAACCAGACAGCAAACTTGATCATCAATGGCTCCAGTACCCGGCCTATTCCTGAAACACTCTTTGGAATTTTCTTCGAGGAGATAAACCATGC
TGGAGCTGGTGGGATATGGGCAGAGCTTGTAAACAATCGGGGTTTTGAAGCCGGGGGCCAAAACACTCCCTCAAATATTGCTCCCTGGTCTATCATTGGT
GATCAGTCATCTTTAATTGTATCTACTGACCGTTCTTCTTGCTTCGAGCGAAACAAGGTTGCTCTCCGAATGGATGTGCTCTGTGACAGCACGGGCGGTA
ATATTTGCCCAGCTGGTGGAGTTGGTATATACAATCCAGGGTTTTGGGGCATGAATATTGAACAAGGGAAGGCCTATAAAGTGGTTCTTTATGTCCGTTC
TCTGGGATCAATCAATGTTTCTGTATCATTGACGAGCTCAGATGGGTCGCAGATATTGGCATCTGCTAACATTGTAGATTCTGATGTTTCAAACTGGACA
AAGGCTGAGGTTCTATTGGAAGCCAAAGGAACAAATCCTAATTCAAGGCTTCAATTGACTACATCCAGAAAAGGTGTAATATGGTTTGATCAAGTGTCAG
CTATGCCTCTGGACACATACAAGGGGCATGGTTTCCGAAATGAGCTCATTGAAATGATCGATGATATAAAACCCCAATTTGTCAGATTTCCAGGTGGCTG
CTTTGTTGAGGGTGAATGGTTGAGAAACGCATTTCGCTGGAAGGAAAGCATTGGACCCTGGGAGGAGAGACCTGGGCACTTTGGTGATGTTTGGATGTAT
TGGACTGATGATGGACTTGGATACTTTGAGTTTCTTCAATTAACTGAAGATCTTGGTGCACGGCCAATATGGGTGTTCAACAATGGAATCAGTCATCAGG
ATCAAGTTGATACTACTGCAGTCTCACCTTTTGTACAAGAAGCCCTTGATGGTCTTGAGTTTGCCAGAGGCGATTCTAATTCTAAGTGGGGTTCTGTCAG
AGCCGCAATGGGGCATCCAGAGCCTTTTGACTTGAAATATGTTGCTGTTGGGAATGAGGATTGCGGGAAGAAGAATTACCGAGGAAATTATCTCAAGTTC
TACAATGCCATAAGAAGTGCCTATCCTGACATCAAAATAATCTCAAACTGTGATGGGTCTTCTCGTTCTTTGGATCACCCAGCTGATTACTATGATTATC
ATGTTTACACATCTGCCAGCAGCCTGTTTTCTATGACTCGTCAGTTTGATCGCACATCCCGCACTGGTCCAAAGGCTTTTGTGAGCGAGTATGCTGTGAC
CGGAAAAGATGCGGGCACAGGAAGTCTTTTAGCTGCACTCGCTGAAGCTGGTTTCCTTATTGGGCTGGAAAAGAACAGCGATATTGTAGAGATGGCAAGC
TATGCACCACTTTTTGTGAATGCCAATGATAGAAGGTGGAATCCAGATGCGATTGTCTTCAACTCGTCAATGCACTATGGAACTCCGAGCTACTGGGTGC
AAAAATTCTTCAGAGAGTCAAGTGGAGCAACTCTTCTTGACGCTAAACTACAAACAAATTCCTCTACACTTGTTGCATCTGCAATTACTTGGCAAAATTC
AGATGGCAAAACTTACCTGAAAATAAAGATTGTGAATTTTGGGAACAGCAAAGTGAATCTCAAAGTTTCCATTGATGGATTGGGGCTCAGCTCACAATTG
TCTGGATCAACAAAAACTGTGCTCACTTCTTCTAACTTAATGGACGAGAATTCCTTCGCGAATCCAAAAAAGGTGGTGCCAGCACAAACTATGCTCGAGA
ATGCTGACAAAGACATGGATGTTGTACTCTCTCCATATTCCTTAACTTCATTTGATTTGTTAACAGAATCAAACAATATCAGGATGCCACAAACTGATTC
TCTCTCAAGATCATCAATTTAG
AA sequence
>Potri.016G025500.1 pacid=42809314 polypeptide=Potri.016G025500.1.p locus=Potri.016G025500 ID=Potri.016G025500.1.v4.1 annot-version=v4.1
MGEKMSSCKASCSVLLACFIVGLCSVCQCSAAEVDANQTANLIINGSSTRPIPETLFGIFFEEINHAGAGGIWAELVNNRGFEAGGQNTPSNIAPWSIIG
DQSSLIVSTDRSSCFERNKVALRMDVLCDSTGGNICPAGGVGIYNPGFWGMNIEQGKAYKVVLYVRSLGSINVSVSLTSSDGSQILASANIVDSDVSNWT
KAEVLLEAKGTNPNSRLQLTTSRKGVIWFDQVSAMPLDTYKGHGFRNELIEMIDDIKPQFVRFPGGCFVEGEWLRNAFRWKESIGPWEERPGHFGDVWMY
WTDDGLGYFEFLQLTEDLGARPIWVFNNGISHQDQVDTTAVSPFVQEALDGLEFARGDSNSKWGSVRAAMGHPEPFDLKYVAVGNEDCGKKNYRGNYLKF
YNAIRSAYPDIKIISNCDGSSRSLDHPADYYDYHVYTSASSLFSMTRQFDRTSRTGPKAFVSEYAVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMAS
YAPLFVNANDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDAKLQTNSSTLVASAITWQNSDGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQL
SGSTKTVLTSSNLMDENSFANPKKVVPAQTMLENADKDMDVVLSPYSLTSFDLLTESNNIRMPQTDSLSRSSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.016G025500
[exp]
0 1
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Potri.006G087100
[exp]
9.27 0.7511 LAC110b
AT4G03440 Ankyrin repeat family protein ... Potri.011G133600
[exp]
18.86 0.7446
AT5G52340 ATEXO70A2 exocyst subunit exo70 family p... Potri.016G071000
[exp]
38.18 0.7189
AT3G12020 P-loop containing nucleoside t... Potri.006G194900
[exp]
58.09 0.7122
AT3G09980 Family of unknown function (DU... Potri.010G235600
[exp]
61.79 0.7058
AT3G01860 unknown protein Potri.010G058700
[exp]
71.74 0.7062
AT2G15280 Reticulon family protein (.1.2... Potri.009G096200
[exp]
90.88 0.6640
AT2G46620 P-loop containing nucleoside t... Potri.015G007800
[exp]
92.74 0.6232
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.003G164000
[exp]
108.30 0.6701
AT3G21530 DNAse I-like superfamily prote... Potri.008G198100
[exp]
122.80 0.6680

Potri.016G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.