Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22470 426 / 5e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 426 / 1e-139 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62670 422 / 3e-139 RPF2 rna processing factor 2 (.1) AT1G62930 420 / 1e-138 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 412 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 408 / 1e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 407 / 2e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 405 / 4e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 404 / 9e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 404 / 2e-132 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038300 [exp] 816 / 0 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G032100 [exp] 734 / 0 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 610 / 0 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 590 / 0 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 578 / 0 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 577 / 0 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 570 / 0 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 570 / 0 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 562 / 0 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029737 [exp] 456 / 1e-151 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008593 [exp] 452 / 2e-151 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 449 / 3e-150 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10042768 [exp] 451 / 6e-150 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 410 / 2e-135 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 410 / 4e-135 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003427 [exp] 350 / 1e-114 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 353 / 1e-113 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 348 / 2e-111 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024962 [exp] 328 / 1e-104 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G025600.2 pacid=42810032 polypeptide=Potri.016G025600.2.p locus=Potri.016G025600 ID=Potri.016G025600.2.v4.1 annot-version=v4.1 ATGATGATGTCCATGGCAATGGCATTGAAGCAACAAAGAGTTTTAATGGCTATTTCTTCTCCTTCAGCTTCAACCCTTCTTGGGTTTCACTCTCAGAGAA GCCAAGCTGAAACGGGTATGATTTTCTTTCTTCATACTTCCAGTAGTAGAAGTGGTAGGCCAAAGTACCAGAAGGGATGCTCTTTTACAAACATTGAAGA TGCCTTGTGTTGCTTTAATCACATGGTTCATATGCATCCCCTGCCTCGTATTATCGAATTTAATGATTTTTTATCAGCTCTTGTCAGAATCAAACATTAT GGGACTGTGCTTTATTTGTCCAAACAAATTGAATTGCTGCAGATCGAACGTGATGTGTGTCATTTTAGCATTTTGATTAATTGCTTCTGTCGCTTGCAAC GCGTGGATTTTGGGTTCTCTGTCTTGGGGAAAATCATTAAGCTTGGTTTTGAACCCAGTGTTATGGTTTTTTCTACTTTAATTAACGGGCTTTGTATTAA GGGTAAAATTGCTCGTGCTGTGGAATTTTTTGATGAGATGGTGGAAAGAGGCTATCCACCTAATCTACATACATATACCACGATTATAAAAGGTTTGTGT AAGATTGGTGAAACCCCTGTTGCTGTTGGATTGCTCAAGAAAATGGACAATGCAGGTTGCCAACCGAATGTTGTCACATACAGTACGCTTATTGATAGCC TTTGCAAGGATAGACTAGTCAAAGAGGCTTTAGATATCTTCTCTGAAATGAAAAGTAAAGGGATTCAACCGAATGTTGTCACTTACAATTCCTTGATGCA TGGTCTATGCAATTCAGACCAGCAGGAAGAGGCGTCAGCATTGTTCAATGAAATGATGAGTTTCAACATCTTGCCAGATGTAGTTACCTTCAACATTTTG GTCGATACATTTTGTAAAAAGGGCAAGATTTCAGAGGCTCAAGGAATAGTCAAGACAATGATTGAGAAGGGTGTGGAGCCTAATACAGTGACTTATAGTT CGTTGATGAATGGATATCTTTTGCAAAACAGAGTTTTTGAAGCTAGAAAGGTATTCAATGCGATGATAACCAGGGGCTGTATACCTGACGTTCTTAGTTA CAACATCTTAATCAATGGATGCTGTAAGGCCCAGAGGATAGATGAGGCAAAACAAATTTTTGATGAAATGAGTTTTCGAGGCTTAATTCCAAACACCGCT ACTTACAACACTCTTATAAGTGGTTTGTCTCAAGCAGGGAGAATTTTTGAAGCAAAAGAGCTTTTCAAGAATATGCATGTCCAGGGCTGCATGCCTAATG TTCTTAGTTACAACATCTTAATCAATGGATCTTGTAAGGCCCTGAGGATAGATGAGGCAAAACAGCTTTTTGATGAAATGAGTTTTCGAGGCTTAATTCC AAACACTGCCAGTTACAACACTCTTATAAGTGGCTTGTTTCAAGTTGGGAGGATTTTGGAAGCAAAAGAGCTTTTTAAGGATATGCATGCCCAGGGCTGC TCCCCAGATCTAGTAACTTACTCAATTTTGCTTGATGGCTTAAGCAAACAAGGTTGCCTTGATCAGGCATTGGAACTATTTCAAGAAATGCAAAACAATT ACTTGAACCCTGATTTGGTGATCTATAATATCTTAATTGATGCCATGTGCAAATCTGGGAAGCTTGAAGATGCAAGGGAGCTGTTTTTGAAACTCATTGT CAAAGGATTGCTGCCTGATGTTCGAAGTTGGACCTCAATAATCAGTGGACTTTGCAGAGAAGGATTGCTAGATGAAGCATACAAAGCTTTCAGACAAATG GAAAGGGATGGCTGCCCACCAGATTGTTGCTCTTACAATGTTATTGTCCGAGGATTTCTCCAGAGCAACAGTGCATCAAGGGCTGAACAACTTTTTCAGG AAATGTTTGATAGAGGATTCTCTGCAGATGCCCTGACCAGAACCTTGGCGGCAGATCTGTTGTCTAAAGATGACAATCTTGGTTTGAAGAGGTTGCTCGG TGAATCTGAATGTTGTCAAGGTGAAAAGGAAATTATCTCAAGTTCTACAATGCCATAA
AA sequence Show only first row Show all	>Potri.016G025600.2 pacid=42810032 polypeptide=Potri.016G025600.2.p locus=Potri.016G025600 ID=Potri.016G025600.2.v4.1 annot-version=v4.1 MMMSMAMALKQQRVLMAISSPSASTLLGFHSQRSQAETGMIFFLHTSSSRSGRPKYQKGCSFTNIEDALCCFNHMVHMHPLPRIIEFNDFLSALVRIKHY GTVLYLSKQIELLQIERDVCHFSILINCFCRLQRVDFGFSVLGKIIKLGFEPSVMVFSTLINGLCIKGKIARAVEFFDEMVERGYPPNLHTYTTIIKGLC KIGETPVAVGLLKKMDNAGCQPNVVTYSTLIDSLCKDRLVKEALDIFSEMKSKGIQPNVVTYNSLMHGLCNSDQQEEASALFNEMMSFNILPDVVTFNIL VDTFCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTA TYNTLISGLSQAGRIFEAKELFKNMHVQGCMPNVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRILEAKELFKDMHAQGC SPDLVTYSILLDGLSKQGCLDQALELFQEMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLIVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQM ERDGCPPDCCSYNVIVRGFLQSNSASRAEQLFQEMFDRGFSADALTRTLAADLLSKDDNLGLKRLLGESECCQGEKEIISSSTMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.016G025600 [exp]	0	1
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	3.16	0.8416
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	3.46	0.8491
AT3G47400			Plant invertase/pectin methyle...		Potri.015G127800 [exp]	4.89	0.8071	PME.7
AT4G24430			Rhamnogalacturonate lyase fami...		Potri.002G110300 [exp]	5.29	0.8281
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Potri.008G136600 [exp]	6.70	0.8285
AT2G16980			Major facilitator superfamily ...		Potri.002G016200 [exp]	8.36	0.8278
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G031901 [exp]	9.48	0.8271
AT5G62350			Plant invertase/pectin methyle...		Potri.015G128700 [exp]	10.24	0.7900
AT2G44260			Plant protein of unknown funct...		Potri.009G025102 [exp]	11.22	0.8257
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.014G074700 [exp]	12.36	0.7956

Compare expression of checked genes

Potri.016G025600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.