Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59580 54 / 6e-09 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 54 / 7e-09 NLP8 Plant regulator RWP-RK family protein (.1.2) AT1G64530 45 / 7e-06 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 44 / 3e-05 NLP7 NIN like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G026066 [exp] 94 / 1e-22 AT3G42170 0 / 1 BED zinc finger ;hAT family dimerisation domain (.1) Potri.007G133400 [exp] 61 / 5e-11 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 55 / 3e-09 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018801 [exp] 54 / 7e-09 AT2G01570 218 / 3e-60 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G018600 [exp] 54 / 1e-08 AT2G01570 215 / 6e-61 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.005G251700 [exp] 44 / 3e-05 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.003G143000 [exp] 42 / 9e-05 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.004G205500 [exp] 40 / 0.0007 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.017G021330 [exp] 39 / 0.0008 AT3G59580 191 / 3e-54 Plant regulator RWP-RK family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008143 [exp] 51 / 1e-07 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 50 / 3e-07 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 49 / 8e-07 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 45 / 8e-06 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 42 / 8e-05 AT4G24020 953 / 0.0 NIN like protein 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G026801.1 pacid=42810322 polypeptide=Potri.016G026801.1.p locus=Potri.016G026801 ID=Potri.016G026801.1.v4.1 annot-version=v4.1 ATGATTGTTAGATGGTTTTGCTGTGGATTTGTGTTTTGCTTTGGTGGTCTTTGTGCACATTCTGAACTTAAAGGCCACTTAAAGACCACGAAGGGTCTTC CTAGACTAAGGTTAAAGTGCTTGGTCTGTTCAGAAAACTTTTTTGCAAGGGGCCTTTGGTCATCTTTTAAACTTCAGACCCTTCTGCTCTCTGCATCTTG TTACGGAATTATCCGGTGGATCAGAAACTTTCATGCTGCTTTTGCTATAAGGCTAACAAGTACCCACTCTTGCAAGGATGATTATGTATTGGAATTTGTT CTCCCAGGAGGCATGAAAGAGACTTCAGAACGAGTACTTTTGATAAATAAGGTCTTGCGTACCTTGCAGAGGAAATGTTTAAAGATGTGGGAAGTTTGGG TCAGAGAACTAAATGAGGCCAGTGGCTCTGAAGTTAGATTGGATGATGAAAGAACGTCAAGCATCCCACATGAAGCAGTTTCTAGGGTTTTTCATTTCCA TCATGCGATGGTGTTTTAG
AA sequence Show only first row Show all	>Potri.016G026801.1 pacid=42810322 polypeptide=Potri.016G026801.1.p locus=Potri.016G026801 ID=Potri.016G026801.1.v4.1 annot-version=v4.1 MIVRWFCCGFVFCFGGLCAHSELKGHLKTTKGLPRLRLKCLVCSENFFARGLWSSFKLQTLLLSASCYGIIRWIRNFHAAFAIRLTSTHSCKDDYVLEFV LPGGMKETSERVLLINKVLRTLQRKCLKMWEVWVRELNEASGSEVRLDDERTSSIPHEAVSRVFHFHHAMVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.016G026801 [exp]	0	1
AT2G38720		MAP65-5	microtubule-associated protein...		Potri.001G032566 [exp]	7.48	0.5988
AT2G19580		TET2	tetraspanin2 (.1)		Potri.006G150400 [exp]	15.74	0.5599
AT3G10080			RmlC-like cupins superfamily p...		Potri.008G020800 [exp]	22.27	0.5388
AT1G15260			unknown protein		Potri.003G053600 [exp]	27.54	0.5246
AT5G54980			Uncharacterised protein family...		Potri.010G208300 [exp]	31.93	0.5592
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.003G064300 [exp]	32.40	0.5045
					Potri.007G081750 [exp]	75.76	0.4974
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.015G126600 [exp]	76.19	0.4571
AT1G23000			Heavy metal transport/detoxifi...		Potri.004G091700 [exp]	79.24	0.4521
AT5G65840			Thioredoxin superfamily protei...		Potri.007G007201 [exp]	82.66	0.4903

Compare expression of checked genes

Potri.016G026801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.