Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24430 66 / 8e-12 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT5G24590 66 / 9e-12 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G17730 63 / 3e-11 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G10480 63 / 8e-11 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 63 / 8e-11 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT1G69490 62 / 1e-10 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G49530 62 / 2e-10 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G46590 61 / 2e-10 NAC ANAC096 NAC domain containing protein 96 (.1) AT2G46770 61 / 3e-10 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G62380 61 / 3e-10 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002900 [exp] 288 / 8e-95 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G028300 [exp] 179 / 6e-53 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 146 / 5e-42 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 148 / 9e-42 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028900 [exp] 138 / 2e-38 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G231300 [exp] 74 / 1e-14 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 67 / 5e-12 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.010G166200 [exp] 66 / 5e-12 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.014G104800 [exp] 66 / 6e-12 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033676 [exp] 84 / 2e-17 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10033279 [exp] 71 / 2e-13 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10022965 [exp] 70 / 3e-13 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10026496 [exp] 69 / 5e-13 AT1G61110 244 / 6e-79 NAC domain containing protein 25 (.1) Lus10015076 [exp] 69 / 8e-13 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10020165 [exp] 69 / 9e-13 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10019926 [exp] 69 / 1e-12 AT1G61110 243 / 4e-78 NAC domain containing protein 25 (.1) Lus10023179 [exp] 69 / 1e-12 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10026966 [exp] 68 / 2e-12 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10026373 [exp] 66 / 5e-12 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.016G027900.1 pacid=42809597 polypeptide=Potri.016G027900.1.p locus=Potri.016G027900 ID=Potri.016G027900.1.v4.1 annot-version=v4.1 ATGCAAAACGGTCTTCCTCGCCCACCTCCTGGATTCAAGTTCGTCCCCACTGAAGAAGAACTGATCAACTATTATCTATACAACAAGATTCATGGAAGAT TTCATGGAGAAGATGCCACCTTGATCAAGGACTACGATCTTTATGGTGAAGAAGAACCCTGGGAAATATTCAACAAATTTCAGGGTCACAAGTTTGGTGA TAATGGGCTTTATTTTCTTACAACGTTACATAAGAAAACAACCAATGGTATTAAGAATATGAATAGAAGTGTTGGTACTCATGGCGGTACCTGGCATGGT GATGGTGGCAAGGAAGTAAAATCCAGTGAAGGAGTTGTTATTGGAACGAAGAAAAGATTTCGATACCACAAACATGGAAAACCAGTCAAGGATGGTTGGA TACTGTTGGAGTATGGTTCAGAATCTATTTCTGAAAATATTGTGATCTCTCAGCTCAAGAAGAGTGAACGTGGTTCTTCAAATGATAAGGAACCAACCTC AAGAAAAAGGAAACACATCAATGCAGAAGTTTTTGAAGTTGCTGAAGATGATGACATACTCAAGATCATGCAAAGCATAGTGATCAACTCTATACCTATA AGGTCACCAGCTCTGGAACCCCAGCAGATTATCCAGAATCAGGACACGTGGCTTGAGGCTGCAACAGTTTCAATGGAGCTTGGGGCATCCGTGACCGTCG ACTCGGGACCTGATCTGTCACTAGCTCAAGAACCGCAGCAGATTACTGCAAATCAGGAGATGTGGCTTGAGGCGGCTTCTGTTGCATGGGAGAATGATGG AGGTTTCTCTACTGCATATTCTTTTGATGATGAGATATCATTCGTCAACGGTGAACCTGTCGGATTGCAATTCGAGCCTGGGCTTGGAAACTTCATTCAA GAACCAATGATCAATGAACATCAACAGATGGCTCTTGCATGTTTTAGTGGCAATCATGAGGAAAAACCTATTTCAGTCGAGGATTATGAGTTGATGGGTC TATCGGAAGCTACCTTTCAATGA
AA sequence Show only first row Show all	>Potri.016G027900.1 pacid=42809597 polypeptide=Potri.016G027900.1.p locus=Potri.016G027900 ID=Potri.016G027900.1.v4.1 annot-version=v4.1 MQNGLPRPPPGFKFVPTEEELINYYLYNKIHGRFHGEDATLIKDYDLYGEEEPWEIFNKFQGHKFGDNGLYFLTTLHKKTTNGIKNMNRSVGTHGGTWHG DGGKEVKSSEGVVIGTKKRFRYHKHGKPVKDGWILLEYGSESISENIVISQLKKSERGSSNDKEPTSRKRKHINAEVFEVAEDDDILKIMQSIVINSIPI RSPALEPQQIIQNQDTWLEAATVSMELGASVTVDSGPDLSLAQEPQQITANQEMWLEAASVAWENDGGFSTAYSFDDEISFVNGEPVGLQFEPGLGNFIQ EPMINEHQQMALACFSGNHEEKPISVEDYELMGLSEATFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.016G027900 [exp]	0	1
AT4G14819			Protein of unknown function (D...		Potri.010G086000 [exp]	9.16	0.7506
AT1G16820			vacuolar ATP synthase catalyti...		Potri.005G107066 [exp]	19.36	0.7524
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Potri.017G082701 [exp]	23.32	0.7288
AT1G19900			glyoxal oxidase-related protei...		Potri.005G235600 [exp]	31.67	0.6994
AT4G10270			Wound-responsive family protei...		Potri.013G147900 [exp]	36.98	0.7497
					Potri.004G111750 [exp]	47.24	0.7450
AT4G19980			unknown protein		Potri.001G123300 [exp]	59.04	0.6689
					Potri.015G100500 [exp]	69.35	0.6975
AT2G06255		ELF4-L3	ELF4-like 3 (.1)		Potri.019G131700 [exp]	78.46	0.7147
ATMG01010		ATMG01010.1, OR...	Unknown conserved protein (.1)		Potri.007G062262 [exp]	100.99	0.7130

Compare expression of checked genes

Potri.016G027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.