Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58290 781 / 0 RPT3 regulatory particle triple-A ATPase 3 (.1) AT4G29040 390 / 2e-133 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 389 / 9e-133 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G19990 317 / 4e-105 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 317 / 4e-105 RPT6A AAA-type ATPase family protein (.1) AT1G53750 315 / 5e-104 RPT1A regulatory particle triple-A 1A (.1) AT1G09100 310 / 2e-102 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 310 / 2e-102 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G45000 305 / 1e-100 AAA-type ATPase family protein (.1.2) AT5G43010 305 / 2e-100 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G031000 [exp] 820 / 0 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.014G194700 [exp] 391 / 9e-134 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 389 / 5e-133 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.006G029100 [exp] 362 / 6e-126 AT5G58290 308 / 2e-105 regulatory particle triple-A ATPase 3 (.1) Potri.006G216600 [exp] 315 / 5e-104 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 314 / 1e-103 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 312 / 4e-103 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.013G016800 [exp] 311 / 1e-102 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.018G056600 [exp] 310 / 2e-102 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006854 [exp] 525 / 0 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1) Lus10037597 [exp] 419 / 2e-148 AT5G58290 419 / 7e-149 regulatory particle triple-A ATPase 3 (.1) Lus10011901 [exp] 387 / 5e-130 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 381 / 1e-129 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10015524 [exp] 372 / 1e-127 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10019995 [exp] 385 / 1e-125 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10001313 [exp] 338 / 1e-113 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10031815 [exp] 316 / 3e-104 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 315 / 4e-104 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10029887 [exp] 313 / 2e-103 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.016G028000.1 pacid=42808901 polypeptide=Potri.016G028000.1.p locus=Potri.016G028000 ID=Potri.016G028000.1.v4.1 annot-version=v4.1 ATGTCGGCGATGGTACTAGACCCGAAACCCGCTCCAGCCACGGAGCCAAGATCCGACCTTGTACTGGACCCATCAACCATACCCATCGAAGACGACGATC TTTACAGTCGCTTAAAGTCTCTCCAAAGGCAGCTCGAATTCATCGAAATTCAAGAAGAGTATGTGAAAGATGAACAGAAGAATTTAAAGCGAGAACTCCT CCGTGCGCAGGAAGAGGTGAAGCGGATCCAGTCGGTGCCGCTTGTAATCGGGCAGTTTATGGAGATGGTGGATCAGAATAATGGGATTGTTGGGTCTACT ACGGGTTCGAATTATTATGTCAGGATTTTGAGTACGATTAATAGAGAGTTGTTGAAGCCGTCGGCTTCTGTGGCGTTGCATCGTCACTCTAATGCTCTCG TTGATGTTCTGCCGCCGGAGGCTGATTCTAGTATTTCTCTGCTTAGTCAGAGTGAGAAACCTGATGTTACTTATAATGACATTGGAGGATGTGACATTCA AAAGCAGGAAATTCGCGAGGCAGTTGAGTTGCCACTAACTCACCATGAGCTGTACAAACAAATTGGTATCGACCCGCCTCGTGGTGTCTTGCTCTATGGT CCTCCTGGAACTGGAAAAACTATGCTTGCCAAGGCCGTTGCTAATCATACAACAGCGGCCTTTATTAGAGTTGTTGGCTCTGAGTTTGTTCAGAAGTATC TGGGCGAGGGTCCCCGTATGGTTCGTGATGTTTTTCGTCTTGCTAAAGAGAATGCCCCAGCAATTATTTTTATTGATGAGGTAGATGCTATTGCTACTGC TAGGTTCGACGCTCAAACTGGAGCTGATAGAGAAGTTCAGCGTATTCTGATGGAGCTCCTGAATCAGATGGATGGGTTTGATCAGACGGTAAATGTCAAG GTCATAATGGCAACTAATCGGGCTGACACTTTGGACCCTGCACTTCTGCGTCCTGGAAGACTTGACCGGAAAATTGAATTTCCTTTGCCTGATAGACGGC AGAAGAGGCTTGTTTTCCAGGTTTGCACTGCAAAAATGAATTTAAGTGATGAGGTGGACTTGGAGGATTATGTGTCTCGACCCGATAAAATTAGCGCTGC TGAGATTCAAGCTATTTGCCAAGAAGCAGGCATGCATGCAGTTCGCAAGAACAGGTATGTCATACTTCCTAAGGACTTTGAGAAAGGCTACCGAACCAAT GTGAAGAAGCCTGACACTGACTTTGAGTTCTACAAGTGA
AA sequence Show only first row Show all	>Potri.016G028000.1 pacid=42808901 polypeptide=Potri.016G028000.1.p locus=Potri.016G028000 ID=Potri.016G028000.1.v4.1 annot-version=v4.1 MSAMVLDPKPAPATEPRSDLVLDPSTIPIEDDDLYSRLKSLQRQLEFIEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGST TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIQAICQEAGMHAVRKNRYVILPKDFEKGYRTN VKKPDTDFEFYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.016G028000 [exp]	0	1	RPT1.2
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.010G164200 [exp]	1.00	0.8007	ATS9.1
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065300 [exp]	4.69	0.7734
AT1G61620			phosphoinositide binding (.1)		Potri.011G040000 [exp]	5.29	0.7370
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	7.48	0.7111
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	9.64	0.7520	Pt-PBB1.2
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	10.24	0.7274	Pt-RPT2.2
AT2G30050			transducin family protein / WD...		Potri.015G068900 [exp]	11.31	0.6545
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	13.96	0.6962	ATS9.3
AT5G10780			unknown protein		Potri.006G266300 [exp]	15.29	0.7047
AT1G65700			Small nuclear ribonucleoprotei...		Potri.001G278000 [exp]	15.49	0.7021

Compare expression of checked genes

Potri.016G028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.