Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 247 / 2e-67 unknown protein AT2G10440 129 / 2e-30 unknown protein AT1G15770 98 / 4e-22 unknown protein AT1G15790 50 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G031200 [exp] 1157 / 0 AT1G15780 242 / 1e-65 unknown protein Potri.003G012400 [exp] 267 / 5e-74 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 244 / 2e-66 AT1G15780 575 / 0.0 unknown protein Potri.001G033400 [exp] 172 / 2e-44 AT1G15780 238 / 3e-66 unknown protein Potri.003G025500 [exp] 88 / 2e-18 AT1G15780 128 / 1e-32 unknown protein Potri.003G028089 [exp] 89 / 7e-18 AT1G15780 223 / 5e-60 unknown protein Potri.003G025200 [exp] 49 / 7e-07 AT1G15780 139 / 2e-39 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025452 [exp] 268 / 4e-74 AT1G15780 248 / 3e-68 unknown protein Lus10015323 [exp] 266 / 1e-73 AT1G15780 587 / 0.0 unknown protein Lus10025450 [exp] 167 / 1e-44 AT1G15780 454 / 8e-149 unknown protein Lus10026119 [exp] 84 / 5e-18 AT1G15780 128 / 3e-34 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0589 [poplar] [flax] KIX_like PF16987 [poplar] [flax] KIX_2 KIX domain
Representative CDS sequence Show only first row Show all	>Potri.016G028200.1 pacid=42809687 polypeptide=Potri.016G028200.1.p locus=Potri.016G028200 ID=Potri.016G028200.1.v4.1 annot-version=v4.1 ATGATGGAGGACAAAAGTTTTAAGGGTTTAAAAGTTGAAGGGATGACAAGTCAAAGACAGGATTGGAGAGCGGAATTGACATCTGAAGTCAGAAAGAAAG TTGTCGAAAAGATACTGGGAAACTTGAAAGACCACTACAAGATGCAGGCTTCTTCTGATCCTGAATTTCTAAATCGGCTAAGGAACATTGCTGTGCAATT TGAAGATAAGACATTCAGAAATTCAGCAACACAGGGAAGTTATGCTTATACAATAGGTAAGAAGATGGGCTCATTTGGTACCATAAAGTCTGAAGCTTCC CAGACAACAGGTAAAAATCCCTCAGGTCTAGGTCAGACCTCAATTGTAAATGATGTTGGTCAAAGCTCGGAGACAAATGCTATAGCACAATTTTCCCAAT ATTTGGTTGGTAATAATTTGGTTGAACAAAATATGCAACCAAATATGTCTCCTGATTTTCAGAGTGAAGTACCAGGAAGCCAGTCTTCAGATCAGAAGCT GATGTACCAGTTACAACAGCAGGAGTTTCAGGATCAAATTCTGAAGGATAAGGTCCAGAATATTAGTAAGAGGTTCGCCATCCAACCTGACATTCATAAC CGCCAACCTCATCAGCGGCAGAAGCATGTTACATCACAGACTTCTCAGAATCTATATTCTCAGCCACCATCAGCATCACCACAATACCAGCAATCATCAT TTTCACAGCCATCAAATAGCACAATGTTTCAACAGAATCAACAACTCAGGCAGCAGCATGATGCTTCAGAGCAGCGACAGTGGTCGATGCCCCAACAAAA CGTTTTACCATCATTCCAGCAGCCCCTAGGCCAACAACGAGATGTTTCTGAAATTCAGCATCAGCAAAAAATGGCTGGACCACAATCAATTATCTTGAAT TCGCAATTGCATCAGAGTTCAAGCCACATGATTCAACAACAAGGGGTTACGGCTTCTGAACAGAAAGTCCAGAAAATCACACAGCCAGTTCAGTCGCATC AGATTCTGGGTTCTCAAAAACAAAGTGGCTTGTCGCAAGAAGGGATCCAACCAAGACCTCAAACTTCAGCTTCCTTTCATCAGCAGAGGAGTATTGCTGA TCAGCAGAAGCTTTTTCAGTCACATAGGTCATTTGCCGGGTCCTCATCAGCATCAGCAGAGCCAAAATCATCAAACCAACTTGCCAATACAGCGGATGGG CATGATGCGGACTATCAAAAGCTTCAAGACTTTAAACAACAGTATAGGCCACAAATGGAATACATATACAAAAATTTGAAGTCCCTACTTGACAAGGAAA CAGATCCAGATCAAGCTATGAGGTACATGAAGCAAGTGATTTGGATAGAAAAAAACATGCCGATTTTTTCATTACAGCGGAATCAGATGGCAAATGCTTC CAAGGAGAAGTTGCAGATGGCTCAGCAAGCTATTATTAAGTTTGTGAACTACTTTCGGAAGAAGAGCTCTGCCTCTGTTGAGCAACAAGCAGACCTTTGT CTGCAGAACAGTGGTCAATCCCAAATATCTCAGCCTCCTCTAAACTGGAATGAGAAACTCCAGTTTCATCCAGTGAATTTAACTATGACAAATGGTTTGG GCAGTTCATCTCTCACATCTTCGATGCAGTCAGGGTTTCTAAATTCACGACCCAGTTTCTTCAGCTCACTTCAATATAGTTCTGGAATGGATTTGGAACA AAGGAATGGACCTAGTATGGTTCAGCAGCCTGCAAGGAAAACAGGCATAATATCTAGCAATAACATTGTGAATGCTTTCGATTCTCCGTTTGCTCATCAG ACAACGCTGACACAGAACCTCGAGCAGCAAATGCAGAAACAAAATATTCAGCACAAAAAGGAACAGATGCTGATCCGTAACAGCCAAAAAAGTGGCTCTC CAGCTATGGAATCTCCAGAAAATCTGCATTTACCACTGATATCAACAACTATACATCAACCACACTCCAGTTCTCCTCGAAAATCTCAGCTCTCTTCTGC TCGTATGGACCAGCAAACTTTTCCTTTAGCTTCTCCCGCTTCTACTCCCTTGACTTCAACATCAGAATATGTCGCCTTTAACCAAGTTGATAGCCAGACA CAAAGTCACAATCAATCTACTGCAAGCGGCACACCTGGGATATCAGCCTCCCCTTTACTCGAAGAGTATACTAGCTCCCCCAACACATCTGACACAAACC AACCACTCCAGCGTTTACTTCAAGCTGTAAAATCACTATCACCAGATGTATTAAGTGCTGCTGTCCATGATATTGACTCAGTTGTCAATGTGGTCGATAA GATTGCTGGCGGATCAGCTGAAAGACACTCCAAGGGTGCTATTGGTGAGGATTTGGTGTCTGAAACAATATTCCATGTACAAGAAAGGAACTTTGCCTTA CAACATTTAAGCATGAAAGACAAAGAGATGGAGCACCAGTCTAATGCAATGGCCTCAGACACGATCGGGCAGCCAATGGATTGGATATCTGATTTTGATT CAACTGCAACATCTAGGTTCAATAAGCTGAGAACCGAGCCGAGGAACGATCTGTTGAACGAAATCAGACATGTAAACAAGCTGTTAGTCGAAACTACTGT AGATGTTGATTCAACAGAAGATGATTCTTTACCTGAAGCTAGTGCAGGAACCATTATCAAATGTTCCTATACGGCTGTGGCCGTCAGTGGAGATTTTAAA TCATTATCTTCATCTCCCATGTTTCCAGAACTTACCTTGCGCTTGCTCGTTCCTGCCGAATTTCCAAATTCTTCTCCAATTATCTTAGATAAGTTACCTT CTGGTTTGAGTGACGAGCTAGAAGATTTGTCGGAGAAGACAAAATTGAGATTCAGCGTAGCTCTTCGGAACCTTTCAGAGCCCATGTCTCTTCTGGAGAT AGCAAGGACTTGGGATGCTTGTGCTAGAGCTGTGCTTTTAGAGCATGTTAAACCACTCGGAGGAGAATGCTTTAGTTCAAGATATGGCACATGGGAGAAT TGTCTAACTGCATAA
AA sequence Show only first row Show all	>Potri.016G028200.1 pacid=42809687 polypeptide=Potri.016G028200.1.p locus=Potri.016G028200 ID=Potri.016G028200.1.v4.1 annot-version=v4.1 MMEDKSFKGLKVEGMTSQRQDWRAELTSEVRKKVVEKILGNLKDHYKMQASSDPEFLNRLRNIAVQFEDKTFRNSATQGSYAYTIGKKMGSFGTIKSEAS QTTGKNPSGLGQTSIVNDVGQSSETNAIAQFSQYLVGNNLVEQNMQPNMSPDFQSEVPGSQSSDQKLMYQLQQQEFQDQILKDKVQNISKRFAIQPDIHN RQPHQRQKHVTSQTSQNLYSQPPSASPQYQQSSFSQPSNSTMFQQNQQLRQQHDASEQRQWSMPQQNVLPSFQQPLGQQRDVSEIQHQQKMAGPQSIILN SQLHQSSSHMIQQQGVTASEQKVQKITQPVQSHQILGSQKQSGLSQEGIQPRPQTSASFHQQRSIADQQKLFQSHRSFAGSSSASAEPKSSNQLANTADG HDADYQKLQDFKQQYRPQMEYIYKNLKSLLDKETDPDQAMRYMKQVIWIEKNMPIFSLQRNQMANASKEKLQMAQQAIIKFVNYFRKKSSASVEQQADLC LQNSGQSQISQPPLNWNEKLQFHPVNLTMTNGLGSSSLTSSMQSGFLNSRPSFFSSLQYSSGMDLEQRNGPSMVQQPARKTGIISSNNIVNAFDSPFAHQ TTLTQNLEQQMQKQNIQHKKEQMLIRNSQKSGSPAMESPENLHLPLISTTIHQPHSSSPRKSQLSSARMDQQTFPLASPASTPLTSTSEYVAFNQVDSQT QSHNQSTASGTPGISASPLLEEYTSSPNTSDTNQPLQRLLQAVKSLSPDVLSAAVHDIDSVVNVVDKIAGGSAERHSKGAIGEDLVSETIFHVQERNFAL QHLSMKDKEMEHQSNAMASDTIGQPMDWISDFDSTATSRFNKLRTEPRNDLLNEIRHVNKLLVETTVDVDSTEDDSLPEASAGTIIKCSYTAVAVSGDFK SLSSSPMFPELTLRLLVPAEFPNSSPIILDKLPSGLSDELEDLSEKTKLRFSVALRNLSEPMSLLEIARTWDACARAVLLEHVKPLGGECFSSRYGTWEN CLTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.016G028200 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Potri.006G042800 [exp]	2.44	0.7685
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.006G024250 [exp]	8.36	0.7453
AT4G00590			N-terminal nucleophile aminohy...		Potri.014G080600 [exp]	9.38	0.7968
AT4G16580			Protein phosphatase 2C family ...		Potri.001G089201 [exp]	11.61	0.7620
					Potri.004G011801 [exp]	22.00	0.7647
AT1G61850			phospholipases;galactolipases ...		Potri.011G000200 [exp]	22.27	0.7517
					Potri.001G422000 [exp]	28.26	0.7295
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	42.21	0.7502
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019200 [exp]	105.60	0.6916
					Potri.003G214400 [exp]	117.14	0.6750

Compare expression of checked genes

Potri.016G028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.