Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40840 1481 / 0 DPE2 disproportionating enzyme 2 (.1) AT5G64860 108 / 4e-24 DPE1 disproportionating enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G031700 [exp] 1870 / 0 AT2G40840 1492 / 0.0 disproportionating enzyme 2 (.1) Potri.007G081400 [exp] 114 / 6e-26 AT5G64860 849 / 0.0 disproportionating enzyme (.1) Potri.014G170300 [exp] 48 / 5e-05 AT2G04270 1009 / 0.0 RNAse E/G-like (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035408 [exp] 1103 / 0 AT2G40840 1078 / 0.0 disproportionating enzyme 2 (.1) Lus10031010 [exp] 1072 / 0 AT2G40840 1063 / 0.0 disproportionating enzyme 2 (.1) Lus10035845 [exp] 108 / 5e-24 AT5G64860 811 / 0.0 disproportionating enzyme (.1) Lus10036626 [exp] 93 / 2e-19 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF00686 [poplar] [flax] CBM_20 Starch binding domain CL0058 [poplar] [flax] Glyco_hydro_tim PF02446 [poplar] [flax] Glyco_hydro_77 4-alpha-glucanotransferase
Representative CDS sequence Show only first row Show all	>Potri.016G028900.2 pacid=42809558 polypeptide=Potri.016G028900.2.p locus=Potri.016G028900 ID=Potri.016G028900.2.v4.1 annot-version=v4.1 ATGGCGAATTTGGGATTGTTTTCTGGGACCAAGACAGCGAAGTCGGTGAATGTGAGTTTTAGATTACCATATTATACTCAATGGGGTCAGAGCCTGCTTG TGTGTGGATCTGAACGAGTCCTGGGTTCATGGGATGTGAAGAAAGGCTTGTTATTGAGCCCTGTGCAGCAAGGTGAGGAGCTCATATGGGGTGGAAGTAT TTCAGTACCAAGTGAATTCAGTGGTGAGTATAGTTACTATGTGGTGGATGATAAGAAGAGTGTGTTGAGATGGGAGATGGGAAAGAAGCGTAAATTAGTA TTGCCCGAGGGGATAAATGGTGGAGAGCATGTGGAGCTTCATGATCTTTGGCAGGCTGGTGGTGATGCCATCCCTTTCAGAAGTGCCTTCAAAGATGTCA TCTTTCGTCGAAGTTGGGGTTTGAACATAGAGAGACCCCTTGGGATTCAGAATAAGTTAGACAAGGAAGTAGATGCAGTCGTTGTCCATTTCAAAATTTG CTGTCCAGATGTAGAAGAAGAGACATCAGTATACGTAATTGGCAGCACTGCAAAGTTAGGGCAGTGGAAAGTTCAGGATGGACTTAAACTTAACTATGCT GGTGACTCAGTTTGGCAGGCAGGTGCTTTGATGCAGAAGGGTGATTTTCCAATAAAGTATAAGTACTGCAAATACGGAAAGGCTGGAAACTTTTCTTTGG AAACTGGTGCACATCGCGACCTTTCTATTGACTCTTCTAAAGTTCCGCCAAGATATATTTTCCTCTCAGATGGCATGATGCGAGAAATGCCTTGGAGGGG TGCTGGTGTTGCATTACCAATGTTTTCTGTTAGATCAGAAGCTGATCTGGGGGTTGGTGAATTTCTTGACTTAAAGCTTCTTGTTGATTGGGCAGTAGTG TCAGGATTCCATTTAGTCCAGCTTCTACCGATCAATGACACATCTGTGCATGGCATGTGGTGGGATTCATATCCATACAGCTCACTATCTGTGTTTGCAT TGCATCCACTATACCTGAGAGTAGAGGCACTTTCAGAAAACCTACCAGAGACTATCAAGAAAGAAATTCAGGAAGCTAGAGAGCAGCTGGATGGAAAGGA TGTTGATTATGAGGCTACTCTGGCTACTAAACTTTCAATCGCCAAGAAAGTGTTTGTACAAGAGAAGGATTTGATACTTAACTCTAGATCCTTTCAGAAA TATTTCTCAGAGAATGAGCAATGGTTAAAGCCCTATGCAGCCTTTTGTTTTTTGCGGGACTTTTTTGAAACATCAGATCACAGCCAATGGGGTCGTTTTT CCTGTTTTACAGAAAAAAAGGTTGAGAAACTTGTCTCAAAAGACAGCTTGCACCATGACATAATTCGCTTCCATTATTATATCCAATTCCATTTGCATAC ACAGTTGACAGAAGCTGCAGAATATGCAAGAAAGAAAGGTGTCATATTGAAAGGAGATCTACCTATTGGTGTAGACAGAAACAGCGTAGATACCTGGGTC TATCCAAATTTGTTCCGCATGAACACCTCCACAGGAGCACCTCCAGATTACTTTGATAAAAATGGGCAGAATTGGGGCTTTCCAACTTATAATTGGGAGG AAATGTCAAAAGATAACTATGCATGGTGGCGTGCTCGTCTAACACAGATGGCAAAATACTTTACAGCTTACAGGATTGATCATATTCTGGGTTTCTTTAG GATCTGGGAGCTTCCAGAGCATGCCATGACAGGTCTGATTGGAAAATTCAGACCATCTATCCCTCTAAGTAAGGAAGAACTTGAAAGAGAAGGAATTTGG GACTTTGATCGCCTGAGCCTCCCATATATCCGGCAGGAATTTGTACAGGAAAGATTTGGAGCTTCTTGGACCTTTATTGTGTCAAATTTTCTGAACGATT ATCAGAAGGGCCGCTATGTGTTCAAGGAGGATTGTGACACGGAGAAAAAGATTGCTTCCAAGTTGAAGATGCTTGCAGAAAAGTCCATGTTATTGGAGAG CGAGGACAAGATACGCCGTGACCTGTTTGATCTTCTGAAGAATATAGTTCTTATTAGAGATCCTGAGGATGAAAGTAAATTCTACCCTCGTTTCAATCTT GAGGACACTTCAAGTTTTCAGGATTTGGATGACCACAGCAAAAATGTTCTCAAAAGACTGTACTATGATTACTATTTCCATCGGCAAGAAAATCTATGGA GGCAAAATGCTTTGAAGACTTTGCCTGCTCTCCTGGACTCATCAGATATGCTAGCCTGTGGGGAAGATCTGGGTCTAATTCCTGCTTGTGTTCACCCTGT CATGCAAGAACTAGGATTGATAGGTTTACGCATTCAACGTATGTCCAGTGAACCTGACCTGGAGTTTGGTATTCCTTCTCAATACAGCTACATGACGGTG TGTGCTCCATCATGTCATGACTGCTCAACCTTGCGTGCTTGGTGGGAGGAAGATGAAGAAAGAAGATGTCGATATTTCAAGAACGTGGTGGGTTCTGATG GAATCCCGCCTAGTCGATGTGTTCCAGAAATTGCACATTTTGTCCTAAGGCAACATGTTGAAGCTCCATCAATGTGGGCAATCTTCCCTCTTCAGGACTT GTTAGCATTAAAAGAAGAGTACACGACACGCCCTGCAGCAGAGGAGACGATCAATGACCCAACAAATCCAAAGCATTATTGGAGATACCGTGTACACGTG ACATTAGAGTCTCTGATGAATGACAAAGAACTCATATCAAGCATCAAAGGTCTTGTTCGTGGGAGTGGACGTTCACATCCTTCGGTTGAAGAAACCGACG AGCAAGGGAATCAAGAAACGATAGTGATGGTTACAGGCAAGCATCAAGCTGCCAAAGGTCTGGAAAAGATTTCCTTTGAAAAGCAACTAACTGGGGTTCC AAGACCGGAGACTTATGTTTTGTAA
AA sequence Show only first row Show all	>Potri.016G028900.2 pacid=42809558 polypeptide=Potri.016G028900.2.p locus=Potri.016G028900 ID=Potri.016G028900.2.v4.1 annot-version=v4.1 MANLGLFSGTKTAKSVNVSFRLPYYTQWGQSLLVCGSERVLGSWDVKKGLLLSPVQQGEELIWGGSISVPSEFSGEYSYYVVDDKKSVLRWEMGKKRKLV LPEGINGGEHVELHDLWQAGGDAIPFRSAFKDVIFRRSWGLNIERPLGIQNKLDKEVDAVVVHFKICCPDVEEETSVYVIGSTAKLGQWKVQDGLKLNYA GDSVWQAGALMQKGDFPIKYKYCKYGKAGNFSLETGAHRDLSIDSSKVPPRYIFLSDGMMREMPWRGAGVALPMFSVRSEADLGVGEFLDLKLLVDWAVV SGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVEALSENLPETIKKEIQEAREQLDGKDVDYEATLATKLSIAKKVFVQEKDLILNSRSFQK YFSENEQWLKPYAAFCFLRDFFETSDHSQWGRFSCFTEKKVEKLVSKDSLHHDIIRFHYYIQFHLHTQLTEAAEYARKKGVILKGDLPIGVDRNSVDTWV YPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIPLSKEELEREGIW DFDRLSLPYIRQEFVQERFGASWTFIVSNFLNDYQKGRYVFKEDCDTEKKIASKLKMLAEKSMLLESEDKIRRDLFDLLKNIVLIRDPEDESKFYPRFNL EDTSSFQDLDDHSKNVLKRLYYDYYFHRQENLWRQNALKTLPALLDSSDMLACGEDLGLIPACVHPVMQELGLIGLRIQRMSSEPDLEFGIPSQYSYMTV CAPSCHDCSTLRAWWEEDEERRCRYFKNVVGSDGIPPSRCVPEIAHFVLRQHVEAPSMWAIFPLQDLLALKEEYTTRPAAEETINDPTNPKHYWRYRVHV TLESLMNDKELISSIKGLVRGSGRSHPSVEETDEQGNQETIVMVTGKHQAAKGLEKISFEKQLTGVPRPETYVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.016G028900 [exp]	0	1
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.008G135200 [exp]	2.44	0.8931	Pt-FKF1.2
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.009G041800 [exp]	3.74	0.9264
AT4G14605			Mitochondrial transcription te...		Potri.017G067600 [exp]	7.21	0.9081
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.010G044100 [exp]	8.30	0.8680
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.009G101400 [exp]	10.00	0.8429
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	12.96	0.8697
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	13.56	0.8989
AT5G13730		SIGD, SIG4	sigma factor 4 (.1)		Potri.009G057200 [exp]	13.96	0.9045
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.014G147900 [exp]	14.49	0.8544
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	20.19	0.8788

Compare expression of checked genes

Potri.016G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.