Plant FIBer expression Database

Potri.016G029100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56590 286 / 4e-91 hydroxyproline-rich glycoprotein family protein (.1.2)
AT3G10810 244 / 9e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
AT1G10790 125 / 7e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G031800
[exp]
492 / 2e-170 AT3G56590 313 / 5e-101 hydroxyproline-rich glycoprotein family protein (.1.2)
Potri.001G210600
[exp]
173 / 9e-48 AT1G10790 188 / 6e-55 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022968
[exp]
156 / 1e-40 AT1G10790 214 / 8e-63 unknown protein
Lus10001613
[exp]
151 / 8e-40 AT3G56590 206 / 6e-62 hydroxyproline-rich glycoprotein family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.016G029100.1 pacid=42810107 polypeptide=Potri.016G029100.1.p locus=Potri.016G029100 ID=Potri.016G029100.1.v4.1 annot-version=v4.1
ATGGGGAAAGTGGGAAATAGTGTTAATGGAAGTGAAGAGGAACAAGGGATAGGTACAAGTGGTGAGAATGGAGAGCAAAATGTAGAGAGGGGATTTTATT
GTTTTGGATGTAAAGGGAATTTTTCTGTTACTAGGTTTATCGGGTTTAGATGTGTTTTTGTACTTTTATTATCTGTTGCCGTTTTTCTTTCTGCTGTTTT
TTGGTTGCCTCCTTTTCTACATTTTGCAGATCAGGGGGATCTGGATCTAGATTACAGGATTAAAGATCATGATATAGTAGCAAGTTTCCTAGTCAAAAAG
CCAGTTTTCTTGCTGGAGGACAATAAATTGAAGCTTCAGGGTGATATTTTTGATGAGATGAGAGTTCCTAATACCAAGGTGGTTATCCTGTCTCTAGAAC
CTTTGGCTGGATCAAACAGAACAAAGGTTGTGTTTGGGGTTGATCCACTTGAAAATGATTCAAAAATATCATCAACTGATCAAAGTCTAATCAGGGGCTC
TTTTGTGTCTTTGGTTGTAAACGATTCATCCCTCGAACTTACTAAGTCCTTGTTCGGAGATGCATCCTCTTTTGAGGTACTTAAATTTCCTGGTGGAATT
ACTATTATTCCACCACAGAGAGCTTTTCTTTTGCAGAAAGTGCAAATACCATTCAACTTCACCTTGAACTTCTCTATTCTTCAAATACGGGAAAAATTTG
CAGAGCTGAAAAGTCAACTGAAGGCAGGACTGCATCTAACGCCCATTGAGAACTTGTATATAGAATTATGGAATTCACAAGGTTCAACGGTGTCTCCCCC
TACCACTGTTAAATCGTCAGTTCTGCTGGTAATTGGGAATACCCCCAGGTTAAAGCAACTGGCTCAAACTATCAGGGGTAATTCTAAGAATCTTGGCCTG
AATAACACTATTTTTGGTAGAGTGAAGCAAGTTCGTCTATCATCTATATTGCAACATTCACTCCATGGTGGTGAAGGCAGTGCCCCTTCACCTTCTCCTA
CTTCTCTTCCTCACCACCACCACCAACACCACCACCACCACCACCACCAACACCACCACCACCACCATGATGCCCATGCTCCTGCAATTTCACCTATACC
TCCACCTAAGAGAAGTGCACCTGCACCTGTTGATGATTCACCTGCCCCATTGAAAAGTTCATCTGCACCTCATAACAACCATGAAGCAAATCCTCCTGGT
TGTCAATTTGGGCGCAAAAGAAGGTTTACAGGGAATGGTGGAAAGAGGTCTCATTTAGCCCCTTCAGTGGCACCTAGTAGTCCTCCTCACTTTGCTGCCT
TGCCTCAACCCGACAATGATCGACCGGAAGTATCACCAGCACCTTCACCGATTTCCCAATCAATTCCTGCATCTAGTCCTTTGCCAAATGTAGTTTTTGC
CCATGCTCAGCCACCATCAAGGGGTAAATCTGATGAGCATTCTGACACAATGCTGCCATTTTCACCTTCACCATCGCCATCTTCATCTTCTGCAGGTCTT
CTCACTGTTCAATGGGTACTATCCCTAATTGCTGTTGTATTACAACTATAA
AA sequence
>Potri.016G029100.1 pacid=42810107 polypeptide=Potri.016G029100.1.p locus=Potri.016G029100 ID=Potri.016G029100.1.v4.1 annot-version=v4.1
MGKVGNSVNGSEEEQGIGTSGENGEQNVERGFYCFGCKGNFSVTRFIGFRCVFVLLLSVAVFLSAVFWLPPFLHFADQGDLDLDYRIKDHDIVASFLVKK
PVFLLEDNKLKLQGDIFDEMRVPNTKVVILSLEPLAGSNRTKVVFGVDPLENDSKISSTDQSLIRGSFVSLVVNDSSLELTKSLFGDASSFEVLKFPGGI
TIIPPQRAFLLQKVQIPFNFTLNFSILQIREKFAELKSQLKAGLHLTPIENLYIELWNSQGSTVSPPTTVKSSVLLVIGNTPRLKQLAQTIRGNSKNLGL
NNTIFGRVKQVRLSSILQHSLHGGEGSAPSPSPTSLPHHHHQHHHHHHHQHHHHHHDAHAPAISPIPPPKRSAPAPVDDSPAPLKSSSAPHNNHEANPPG
CQFGRKRRFTGNGGKRSHLAPSVAPSSPPHFAALPQPDNDRPEVSPAPSPISQSIPASSPLPNVVFAHAQPPSRGKSDEHSDTMLPFSPSPSPSSSSAGL
LTVQWVLSLIAVVLQL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56590 hydroxyproline-rich glycoprote... Potri.016G029100
[exp]
0 1
AT5G42710 unknown protein Potri.014G185300
[exp]
8.66 0.8317
AT1G70750 Protein of unknown function, D... Potri.010G109900
[exp]
9.53 0.7811
AT1G49890 QWRF2 QWRF domain containing 2, Fami... Potri.001G295800
[exp]
11.22 0.8245
AT5G15740 RRT1 O-fucosyltransferase family pr... Potri.015G048100
[exp]
13.85 0.8117
AT1G19835 Plant protein of unknown funct... Potri.002G024400
[exp]
15.16 0.8112
AT5G19390 Rho GTPase activation protein ... Potri.009G069700
[exp]
19.33 0.7719
AT5G48820 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibit... Potri.017G054000
[exp]
21.16 0.7359
AT3G08670 unknown protein Potri.016G139500
[exp]
21.35 0.7761
AT2G24240 BTB/POZ domain with WD40/YVTN ... Potri.018G107600
[exp]
23.49 0.7701
AT3G04910 ATWNK1, ZIK4, W... with no lysine (K) kinase 1 (.... Potri.005G049800
[exp]
27.38 0.7052

Potri.016G029100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.