Plant FIBer expression Database

Potri.016G029200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65440 1961 / 0 GTB1 global transcription factor group B1 (.1.2.3)
AT1G63210 1571 / 0 Transcription elongation factor Spt6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G031900
[exp]
2584 / 0 AT1G65440 1982 / 0.0 global transcription factor group B1 (.1.2.3)
Potri.001G034300
[exp]
1298 / 0 AT1G65440 1251 / 0.0 global transcription factor group B1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011344
[exp]
2040 / 0 AT1G65440 1946 / 0.0 global transcription factor group B1 (.1.2.3)
Lus10003130
[exp]
2017 / 0 AT1G65440 1938 / 0.0 global transcription factor group B1 (.1.2.3)
Lus10029079
[exp]
1543 / 0 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3)
Lus10029085
[exp]
796 / 0 AT1G65440 761 / 0.0 global transcription factor group B1 (.1.2.3)
Lus10034231
[exp]
458 / 3e-143 AT1G65440 426 / 2e-133 global transcription factor group B1 (.1.2.3)
Lus10029034
[exp]
417 / 2e-133 AT1G65440 404 / 2e-130 global transcription factor group B1 (.1.2.3)
Lus10013071
[exp]
296 / 2e-85 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3)
Lus10029078
[exp]
152 / 1e-42 AT1G65440 150 / 5e-43 global transcription factor group B1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0541 SH2-like PF14633 SH2_2 SH2 domain
CL0198 HHH PF14635 HHH_7 Helix-hairpin-helix motif
CL0580 YqgF PF14639 YqgF Holliday-junction resolvase-like of SPT6
Representative CDS sequence
>Potri.016G029200.1 pacid=42810404 polypeptide=Potri.016G029200.1.p locus=Potri.016G029200 ID=Potri.016G029200.1.v4.1 annot-version=v4.1
ATGGGCAAAAACGTTGTTTCTGATGAAGATGAGGTGGAGTTCGAAGACGAAGAGAGAGAGCCTGTTGATGGAGATAGAATTGACCGCCGCCGCCACCACG
ACGACGACGACGACGAGGATGAAGAAGGGCAGGATGAATATGAGAAGGATGATTTTATAGTGGATGATGTTGAGGAAGAAGAGGAGGCGGATGAAGAAGA
GGAGAGGGCAGATAGTGATGAAGAGAGGCTCAAGAAGAAGAAGAAAAAGAAGAAAAGAGAAGCTGAGGATGTCCTTGATGAAGATGATTACGAGCTCCTG
CGGGACAACAATGTGTACCATCATCGGCCAAAGGATAGCAAAAAATTCAAGCGTTTGAAGAAAGCTCAGAGGGATTCAGATGAGGACCTTTCTGATGACG
AGTTTGATGGAAGCGGTAAAGGTGGGCGAACTGCTGAGGAGAAACTGAAGCGCAGCTTATTTGGTGATGATGAAGGTGTTCCACTTGAGGATATGCCTGA
AGAGGAGGAGCAAGAAGAAGTGGAAGAGGATGCAGACATTGGTGATGAGGATGAGATGGCTGATTTTATCGTGGATGAAGATGATGAGGATGGAACTTTA
GTGAGACGCAAGAAGCTAAAGAAAAAGAAATCTCGGCAGGCATCTGGAGCTTCATCTTCTGCTTTGCAAGAAGCTCAAGAAATATTTGGTGATGTTGATG
AACTCATACAGATGCGCAAGCAAGGTTTAGAATCTAGTGAATGGAGAGAAAGGAGATTGGAAGATGAATTTGAACCAACTGTCCTATTTGAAAAATACAT
GACTGAGAAAGATGATCAGATTCGGATGATTGATATTCCAGAAAGAATGCAGGTATCCGAGGAAAGCACTGGTCCTCCTCCATTGGATGATTTCAGCATA
CTGGAGGAGAGCAACTGGTTATATAGTCAGATTGCAAGCGGAACAGTACCTTTGTTTGCCAAGAATGGACTGTTTATAAACAAGGATGATGTTACCCGAT
TTTTGGAATTACATCACATTCAGAAGTTAGATATACCCTTCATTGCTATGTATCGGAAAGAGGAATGTTTAAGCCTGTTGAAAGATCCCGATCAACATGA
AGACAATGAAAATTATGATGACACTGATAAAAATCCCACATTCAAGTGGCACAAGGTTCTTTGGGCCATCCAGGACTTGGACAGGAAGTGGCTACTTCTT
CAGAAACGAAAGAGTGCCCTCAATTCATACTACAATAAGCGCTTTGAAGAAGAATCTCGACGGATATATGATGAAACGAGACTTAATTTAAATCAGCAGC
TGTTTGAGTCAATTCTTAAATCACTGAAGACTGCTGAATCAGAAAGAGAGGTTGATGATGTCGATGCAAAATTTAACCTGCATTTTCCACCAGGTGAGGT
TGGGGCTGATGAAGGACAGTACAAGAGGCCCATGCGGAGATCACAATACAGTATCTGTAGTAAGGCTGGCCTATGGGAAGTTGCAAGTAAATTTGGTTAC
AGTGCCGAGCAACTGGGAATGCAGTTATCTTTATTAAAGATGGAGGACGAGTTGCAGGATGCCAAGGAAACACCAGAGGAGATGGCTTCGAATTTTACAT
GTGCAATGTTCGAAAGTCCCCAAACAGTTCTTAAAGGGGCTAGGCACATGGCTGCAGTTGAGATAAGTTGTGAGCCCTGTGTCAGGAGATATGTCCGTTT
CATTTTTATGGACAATGCTGTTGTGTCTACAAGTCCAACGGCAGATGGGAATGCTGCCATTGATTCCTTCCATCAGTTTGCGGGTGTCAAGTGGTTGCGT
GAAAAGCCAATCAAGATGTTTGAGGATGCACAATGGCTCCTTATCCAAAAGGCTGAAGAGGAGAAACTTCTTCAAGTCACTGTTAAGCTTCCACAAAAAG
TTATGGATCAATTGATTGAGGACTGTAATGGTCGCTACTTGAGTGTTGGTGTCAGTAAATATGCTCAACTGTGGAATGAGCAAAGGAGTTTGATACTGAA
GGATGCACTCTTTGGTTTTTTGTTACCTTCAATGGAGAAAGAGGCTAGATCCTTGTTGGCTAGCAGAGCTAAAAACTGGTTGCTTTATGAATATGGGAAG
GTTCTGTGGAATAAAGTCTCTGTGGGACCATATCAACGGAAAGAAAGTGATGTTTCCATGGACGATGAAGCTGCACCTAGGGTGATGGCCTGCTGTTGGG
GTCCTGGAAAACCAGCAACTACTTTTGTGATGTTAGATTCATCTGGGGAGGTTTTAGATGTGCTTTACACTGGGTCCCTTACATTAAGATCTCAAAATGT
TAATGATCAGCAACGCAAGAAAAATGATCAGCAACGTGTTCTGAAATTTATGACAGACCACCAACCTCACGTGGTGGTTCTGGGAGCTGCACACTTGTCT
TGTACTAAACTGAAAGATGATATTTATGAGATTATCTTTAAAATGGTGGAGGAAAATCCTAGAGATGTTGGACATGAGATGGATGAACTGAGCGTTGTGT
ATGGGGACGAATCTCTCCCTCGTTTATATGAAAATTCTCGGATTTCTTCTGATCAACTACCTGGGCAGTCAGGCATTGTTAAACGGGCTGTTGCTCTTGG
CCGTTGTCTGCAAAATCCTTTGGCTATGGTTGCAACACTATGTGGTCCAGCCAGGGAGATTTTATCTTGGAAACTAAACCCTTTGGAGAACTTTCTTACC
CCTGATGAGAAATACTTGGTGATTGAACAAGTTATGGTAGATGCCACAAACCAGGTGGGCCTTGACATTAATTTGGCCACAAGCCATGAATGGTTATTCG
CTCCTTTGCAGTTCATTTCTGGGCTTGGACCTAGAAAGGCAGCATCTTTACAGAGGTCTCTAGTAAGAACTGGAGCGATTTTCACTCGCAAGGACTTTGT
TACAGCTCACGGTCTTGGTAAAAAGGTGTTTGTCAATGCAGTTGGTTTTTTGCGTGTCCGGAGGAGTGGCCTTGCTGCTAGCAGCAGCCAGTTCATTGAT
GTGTTAGATGATACGAGGATACATCCAGAATCCTATGGTCTCGCACAGGAGTTGGCAAAAGTTGTTTATGAAAAGGACAGTGGTGATGCAAACGACGATG
ACGATGCATTAGAGATGGCAATAGAATATGTTAGAGAGCGGCCTAATTTATTGAAAACATTTGCTTTTGATTTGTATTTTAAAGACAATAAGCGGGACAA
CAAGAAGGAGACTTTCAAAGATATAAAAATGGAACTGATACAAGGTTTCCAGGATTGGCGTAAACAGTATAAAGAACCAACCCAGGACGAGGAATTTTAT
ATGATTTCAGGTGAAACTGAGGATACCCTTGCTGAAGGGAGAGTTGTACAAGCCACGGTTCGCAGGGTGGTTGGTGGAAAGGCAATATGTGCACTGGAAA
CTGGTCTGACTGGGATTCTTACGAAGGAGGACTATGCTGATGATTGGAGGGATATACCTGAGTTGTCTGACAAGCTGCGCGAAGATGATATACTGACTTG
CAAGATCAAATCAATTCAAAAGAATAGATATCAAGTGTTCTTGGTTTGCAAAGACAGTGAGATGAGAAGTAACCGATATCGGCAGGTACAAAACCTTGAT
CTCTATTTTCATGAAGACCAAAGCAGTATGAGGAGTGAGCAGGAGAAGGTTCGCAAAGAGAGGGAGCTTGCAAAGAAACATTTTAAGCCTAGAATGATTG
TTCATCCACGCTTCCAGAATATAACTGCTGATGAAGCCATGGAGTTCTTATCCGACAAGGATCCCGGAGAAAGTATTATTCGTCCTAGTTCTCGTGGACC
TTCGTATTTAACTTTAACTCTTAAAGTTTATGATGGAGTTTATGCTCACAAAGACATAGTCGAAGGGGGGAAGGAACACAAAGATATCACAAGTTTACTT
CGTATTGGGAAGACATTGAAAATAGGAGAGGATTCTTTTGAGGATTTGGATGAGGTAATGGACCGCTATGTTGATCCCTTGGTGGGCCATCTAAAGTCAA
TGCTAAATTATCGCAAGTTCAGAAGTGGCACTAAAGCAGAAGTTGATGAGCTCCTAAGGATTGAGAAATCACAACAGCCTACTAGGATAGTTTATTCGTT
TGGCATTTCTCATGAACACCCAGGGACTTTCATTCTCACTTATATAAGGAGTACAAATCCACATCACGAGTATGTTGGTCTATATCCTAAGGGATTCAAG
TTTCGAAAGCGCATGTTTGAGGACATTGACCGGCTTGTGGCATATTTTCAAAAGCATATAGATGATCCCTTACATGAATCAGCACCATCAATCAGGTCAG
TTGCTGCCATGGTCCCAATGCGAAGCCCTGCAACAAGGGGTTCTTCCTGGGGTGGTTCAACGGATGAAGATGGCTGGAGAGGGCAATCTTTTGACAGAGA
TCGTTCTTCTGGTCCAGGTTCCAGGACAGGTCGAAATGATTATAGAAGTGGTGGTAGTCGAGATGGTCATCAGAATGGGCCCCCAAGACCATTTAGTGGG
CGAGGACGTGGTCGCGGATCGTATAACAGCACCAGAGGAAATAATAGTGGCAATGAGAGGCAAGATTCTGGTTATGACAAGCCCAGATGGGATTCAGGTA
CCAAGGATAACGATGAAGGTTGGGGCAGTTTCCCAGGTGCCAAAGTCCAAAACTCTCCTGGCAGGGAAGCCTTTCCTGGTGGCTGGGGAACTGGTGCAAG
TGGTGGTGATAATGGTGGTCGGGGCCATGGAAATGGTGGTGACACTGATAGTGGGAATGCTGGCTGGGGTAATACTAGCTTGAAAAGAGATTCAGCACAA
GGGGGCTGGGGTGCTGGTGGAGGTGGAAGTGGTGGTGGTGACTCTGGTCATGGAACTGGTGGTGGAGGCACTGACAATGGGAATTCTGGGTGGGGTAATA
GCTCTAAAAAAGGTGGGACACAAAGTGGCTGGGGTTCTGGTGGAAGAGGCGGTGGCGGCGATGTGGGTCAAGGAAGTGGTGGAGTCACTGACGATGGGAA
ATGGGGTACGGCCTCTAAGAGAGATTCTTCACAATCACAAGCCGACAATGGATGGTCAGGAGGTGGTGGTGGTTGGTGA
AA sequence
>Potri.016G029200.1 pacid=42810404 polypeptide=Potri.016G029200.1.p locus=Potri.016G029200 ID=Potri.016G029200.1.v4.1 annot-version=v4.1
MGKNVVSDEDEVEFEDEEREPVDGDRIDRRRHHDDDDDEDEEGQDEYEKDDFIVDDVEEEEEADEEEERADSDEERLKKKKKKKKREAEDVLDEDDYELL
RDNNVYHHRPKDSKKFKRLKKAQRDSDEDLSDDEFDGSGKGGRTAEEKLKRSLFGDDEGVPLEDMPEEEEQEEVEEDADIGDEDEMADFIVDEDDEDGTL
VRRKKLKKKKSRQASGASSSALQEAQEIFGDVDELIQMRKQGLESSEWRERRLEDEFEPTVLFEKYMTEKDDQIRMIDIPERMQVSEESTGPPPLDDFSI
LEESNWLYSQIASGTVPLFAKNGLFINKDDVTRFLELHHIQKLDIPFIAMYRKEECLSLLKDPDQHEDNENYDDTDKNPTFKWHKVLWAIQDLDRKWLLL
QKRKSALNSYYNKRFEEESRRIYDETRLNLNQQLFESILKSLKTAESEREVDDVDAKFNLHFPPGEVGADEGQYKRPMRRSQYSICSKAGLWEVASKFGY
SAEQLGMQLSLLKMEDELQDAKETPEEMASNFTCAMFESPQTVLKGARHMAAVEISCEPCVRRYVRFIFMDNAVVSTSPTADGNAAIDSFHQFAGVKWLR
EKPIKMFEDAQWLLIQKAEEEKLLQVTVKLPQKVMDQLIEDCNGRYLSVGVSKYAQLWNEQRSLILKDALFGFLLPSMEKEARSLLASRAKNWLLYEYGK
VLWNKVSVGPYQRKESDVSMDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQQRVLKFMTDHQPHVVVLGAAHLS
CTKLKDDIYEIIFKMVEENPRDVGHEMDELSVVYGDESLPRLYENSRISSDQLPGQSGIVKRAVALGRCLQNPLAMVATLCGPAREILSWKLNPLENFLT
PDEKYLVIEQVMVDATNQVGLDINLATSHEWLFAPLQFISGLGPRKAASLQRSLVRTGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFID
VLDDTRIHPESYGLAQELAKVVYEKDSGDANDDDDALEMAIEYVRERPNLLKTFAFDLYFKDNKRDNKKETFKDIKMELIQGFQDWRKQYKEPTQDEEFY
MISGETEDTLAEGRVVQATVRRVVGGKAICALETGLTGILTKEDYADDWRDIPELSDKLREDDILTCKIKSIQKNRYQVFLVCKDSEMRSNRYRQVQNLD
LYFHEDQSSMRSEQEKVRKERELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKEHKDITSLL
RIGKTLKIGEDSFEDLDEVMDRYVDPLVGHLKSMLNYRKFRSGTKAEVDELLRIEKSQQPTRIVYSFGISHEHPGTFILTYIRSTNPHHEYVGLYPKGFK
FRKRMFEDIDRLVAYFQKHIDDPLHESAPSIRSVAAMVPMRSPATRGSSWGGSTDEDGWRGQSFDRDRSSGPGSRTGRNDYRSGGSRDGHQNGPPRPFSG
RGRGRGSYNSTRGNNSGNERQDSGYDKPRWDSGTKDNDEGWGSFPGAKVQNSPGREAFPGGWGTGASGGDNGGRGHGNGGDTDSGNAGWGNTSLKRDSAQ
GGWGAGGGGSGGGDSGHGTGGGGTDNGNSGWGNSSKKGGTQSGWGSGGRGGGGDVGQGSGGVTDDGKWGTASKRDSSQSQADNGWSGGGGGW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G65440 GTB1 global transcription factor gr... Potri.016G029200
[exp]
0 1
AT1G65440 GTB1 global transcription factor gr... Potri.006G031900
[exp]
1.00 0.9385
AT5G04290 SPT5L, KTF1 SPT5-LIKE, kow domain-containi... Potri.008G032800
[exp]
1.41 0.9117
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Potri.003G022100
[exp]
3.00 0.9078 CHR928,PIE1.4
AT1G77800 PHD finger family protein (.1.... Potri.005G171800
[exp]
3.16 0.8805
AT5G02950 Tudor/PWWP/MBT superfamily pro... Potri.008G044600
[exp]
3.46 0.8755
AT3G09670 Tudor/PWWP/MBT superfamily pro... Potri.010G216900
[exp]
3.87 0.8520
AT5G61140 U5 small nuclear ribonucleopro... Potri.015G056501
[exp]
5.38 0.8340
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.007G014100
[exp]
5.47 0.8642
AT5G23080 TGH TOUGH, SWAP (Suppressor-of-Whi... Potri.012G058100
[exp]
6.00 0.8432
AT2G13370 CHR5 chromatin remodeling 5 (.1) Potri.009G047800
[exp]
6.92 0.8875

Potri.016G029200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.