Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56550 740 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 446 / 9e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G59720 430 / 7e-144 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 426 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47530 423 / 1e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 423 / 2e-141 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G34160 422 / 2e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 417 / 3e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31920 414 / 5e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 418 / 7e-137 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 458 / 1e-154 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G199800 [exp] 446 / 7e-151 AT1G34160 702 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 446 / 2e-150 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G074500 [exp] 442 / 1e-148 AT3G47530 750 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 439 / 2e-147 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G135400 [exp] 428 / 1e-143 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 426 / 2e-142 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 424 / 1e-141 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 421 / 9e-140 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037387 [exp] 834 / 0 AT3G56550 700 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041326 [exp] 826 / 0 AT3G56550 702 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041327 [exp] 447 / 4e-155 AT3G56550 406 / 3e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 423 / 3e-141 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 422 / 1e-140 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029401 [exp] 420 / 1e-140 AT1G34160 674 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 415 / 4e-138 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 404 / 2e-134 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 405 / 7e-134 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025490 [exp] 403 / 2e-133 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.016G029500.1 pacid=42810486 polypeptide=Potri.016G029500.1.p locus=Potri.016G029500 ID=Potri.016G029500.1.v4.1 annot-version=v4.1 ATGATGGTTTTGGAGACATCAAAAGCCAATGCCATTCTTACAGTCTTACAAGGATGCAATAATTTGACAAGGCTTAAAAAAATCCAAGCTCATGTCATTG TTAACGGTCTTCAAAACCATCCCGCCATTTCTAACAGCATTTTGAATTTCTGTGCTGTTTCAATCTCAGGTTCATTACCCTATGCACAACACCTCTTTAG ACACATTCTAAACCCACAAACTCAAGCTTGGAATTCTATCATCAGAGGATTTGCTCAAAGCCCATCTCCTGTTCAAGCCATTTTTTACTATAATCGCATG CTTTTTGACTCGGTTTCTGGTCCTGATACTTTCACTTTCTCTTTTACTCTCAAGGCATGTGAGAGAATTAAGGCCTTGAAGAAATGTGAAGAGGTTCATG GGTCTATAATAAGAACTGGGTATGAAAGAGATGTTGTTGTTTGCACTGGTCTTGTGAGGTGTTATGGGGGGAATGGGTGTGTTGAGATTGCAAGAATGGT TTTTGATAATATGCCTGAAAGAGATTTGGTTGCGTGGAATGCGATGATTTCGTGTTATTCGCAGGCGGGTTATCACCAGGAAGCGTTGAGAATTTATGAT TATATGAGAAATGAGAACGTGGGTGTTGATGGGTTTACACTTGTTGGGTTGATTTCGTCTTGCTCTCATGTGGGTGCTTTGAATATGGGGGTTAAATTGC ATAGGATTGCTAGTGAGAAAGGATTGTTGAGAAATGTGTTTGTTGGGAATGCGCTTATTGATATGTATGCTAAATGTGGTAGCTTGGATGGTGCTCTTGA AGTCTTTAATGGGATGCCGCGGGACGTTTTTACTTGGAACTCTATGATTGTTGGGTTTGGAGTGCATGGTTTTGGTGATGAAGCTATTTATTTTTTCAAT CAGATGTTGGAGGCAGGAGTGCGACCTAATTCAATTGCGTTTCTTGGTTTGTTGTGTGGATGCAGTCATCAAGGATTAGTTGAAGAGGGTGTTGAGTTTT TCCATCAAATGAGCTCTAAGTTCAATGTCAAGCCTGGAATTAAGCATTATGGATGCATAGTGGATATGTATGGACGTGCTGGGAAGCTTGAGAAGGCGCT CGAAATCATAGGTGATTCTCCATGGCAGGATGATCCGGTTTTGTGGCGAATTCTGCTTAGCTCTAGCAAGATTCACAAAAATGTAGTGATTGGGGAAATT GCTATGAGGAATCTGTCTCAGCTTGGGGCAGTAAATGCAGGGGATTGTGTACTACTTGCTACCATATATGCTGGAGCCAATGATGAACAAGGTGTTGCCA GAATGAGAAAACTAATAAAAAAGCAAGGAATAAAGACCACTCCTGGTTGGAGCTGGATTGAAGTTTCTGACCAGGTTCACAGATTTGTTGTGGATGATAA GTCACATCCTGATTCAGGAATGATTTATCAAAAATTGGAGGAAGTAACACATAAGGCCACCATGGCTGGTTATGTAGAAGACAAGTCTCAATTCATCTTT CATGGATCGTGCTCTGAAGAGTGTTTGGAGTCTTCCAGCACATATCATAGTGAGAAGCTGGCAATTGCTTTTGGTTTGGCGAAAACTCCTGAAGGAACAA GTCTTCGGATTGTGAAGAACTTGAGAGTCTGTAGAGATTGCCATGAATTTACAAAGTTTGTTTCTCGAGCATTCAATCGAGATATCATCGTTAGAGATCG ACTTCGATTTCATCACTTTAAGGGTGGACTTTGTTCGTGTAGAGATTATTGGTAA
AA sequence Show only first row Show all	>Potri.016G029500.1 pacid=42810486 polypeptide=Potri.016G029500.1.p locus=Potri.016G029500 ID=Potri.016G029500.1.v4.1 annot-version=v4.1 MMVLETSKANAILTVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRM LFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGGNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRIYD YMRNENVGVDGFTLVGLISSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMPRDVFTWNSMIVGFGVHGFGDEAIYFFN QMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEI AMRNLSQLGAVNAGDCVLLATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSGMIYQKLEEVTHKATMAGYVEDKSQFIF HGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	0	1
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	1.73	0.9273
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	2.82	0.9145
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	4.89	0.9207
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	7.48	0.8899
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132500 [exp]	9.38	0.8656
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	10.53	0.9166
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	10.95	0.8882
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	11.83	0.8982
AT1G50840		PolIA, POLGAMMA...	polymerase I A, polymerase gam...		Potri.011G136900 [exp]	12.24	0.8720
AT1G62260		MEF9	mitochondrial editing factor 9...		Potri.009G139200 [exp]	12.48	0.8791

Compare expression of checked genes

Potri.016G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.