Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 645 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 597 / 0 EFR EF-TU receptor (.1) AT3G47090 582 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 566 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 540 / 9e-176 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 496 / 2e-157 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 481 / 5e-151 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 454 / 4e-141 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G24130 446 / 2e-140 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 441 / 2e-136 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068500 [exp] 933 / 0 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G150000 [exp] 811 / 0 AT3G47570 506 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150100 [exp] 806 / 0 AT3G47570 503 / 4e-161 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 630 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 622 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 621 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G030800 [exp] 620 / 0 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 619 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 619 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037840 [exp] 630 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 624 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 618 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 618 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 611 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 611 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 611 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 607 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 606 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 603 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G029900.3 pacid=42810201 polypeptide=Potri.016G029900.3.p locus=Potri.016G029900 ID=Potri.016G029900.3.v4.1 annot-version=v4.1 ATGGGGAGAGTTTGGATCACTATTCTTGTTTCGATGCTGCTAATGTCTCTGCCGAAGAAATGCATTAGCATACCCACAAGTAACTTCACTGATCAATCTG CTCTTCTTGCCTTCAAGGATCACATTACTTTTGATCCTCAAAACATGCTAACTCACAGCTGGTCCTCCAAAACCTCCTTCTGTAACTGGATGGGAGTCTC TTGCAGTCTTCGCAGGCAAAGAGTCACAGCGCTGGATCTCTCTAGCATGGGCCTCCTAGGGACCATTCCTCCACAACTTGGAAACCTGTCCTTTCTTCAA TATCTGATTCTTTACAACAATAGTTTCCATGGAGATCTACCCAGCGAGATAGGTAATTTACGCCGATTGCAAGTAATGGATATAGGTTCCAATAAGTTAT CATTAGTGATAGTACCCGAAAGTTTTGGGAATTTGCACAGACTTGAAGAATTAAGATTCGATGGAAATAATCTCACAGGTACAATCCCATCCACAATCTT CAACATCTCTTCCTTGAAAGTCCTTGATCTCATGTTTAACGGCCTATTTGGAAGTCTTCCGAAGAACATGTGCGACCATCTTCCTAGACTAGAAATGCTT TTGCTTTCCTCTAATCAACTCAGTGGCCAAATCCCATCTGATTTATTCAAATGTAGAGAGCTACAATTATTATGGTTGCCTTATAATAACTTCACTGGAG TTATTCCAGAAGAACTTGGATTCCTCCCTATGCTTGAGGTTCTAAATCTTGGTGTCAATATGTTGTCAGGTGATTTGCCTCGATCGATCTTCAACATGAC TTCTTTAAGAACCATGCAAATTTGTTGCAATAACCTGTCAGGATCAATACCTCAAGAAAACAGCATTGATCTTCCTAACTTGGAGGAACTGCAATTAAAT CTAAATGGTATAACAGGGTCAATGCCACGCTTTCTTGGGAATATGTCCAGGTTGGAGATACTTGATTTGTCATATAACAAGATGACTGGAAATGTTCTAC AAGAATTTGGAAATTTGAGAGCGCTGCAAGTCCTCAGTTTGCAATCCAATTCCTTTACTAATCACCCTTCCAGTCAGACACTCAACTTCATCACCTCTTT GACAAATTCTAGGCAGTTGAAAGAATTGCATATTGGGGACAACCCTTTAGATGGCATGTTGCCCAATTCCGTAGGGAATTTATCCAGCTTTCTAACAAAA TTTTATGTATACGCCAGCAAGCTCAAAGGCAATATTCCAGGTGAGATTGGCAACTTGAGCAACCTAATTGTCTTAAGTTTGGAAGAGAATAGTCTGATGG GACCTATTCCTACAACAGTGGGAGGGCTAAGGAAGATTCAAGTACTATATCTTCATAAAAACAATCTTAATGGTTCCATTCCATCTGATATATGTCTTGC AAGGAGGTTGGTTGACATAACATTAAACAATAACGTATTGTCTGGAGAGATACCTTCCTGCATAGGGAATCTCACGTCTCTAAGAAACCTTTATCTTCAC TTCAATATATTAAGTTCTACCATACCTATGGCTCTGTGGAGCCTAAAGGATCTCTTGATTTTGAATCTGCATTCAAATTTTCTATATGGATCTCTTCCTT CGCAAGTTGGAGAAATGGAAGCTGCAATAGGAATTCGTTTGTCAAGCAACCAGTTGTCAGGTAATATTCCGAGTACAATAGGTTCACTCCAGAACTTGAT AAGATTTTCATTATCCAAAAACAGCTTTCAAGGGTCCATTCCAGAAGCATTCGGTGGTTTGGTAAGCCTGGAACTCTTAGATCTATCACAAAATAACTTG TCTGGTGAGATTCCCAAATCACTAGAGGCACTTAGATATTTGGAGTTTTTCAGTGTGTCTTTTAATGGACTACAAGGAGAAATTCCAAGAGGAGGACCGT TCGCAAATTTTACTGCTCGTTCTTTTATTATGAACAAGGGTCTATGCGGTCCATCTCGGCTGCAAGTCCCACCTTGCAGCATTGAATCTCGTAAAGATTC AAAGACTAAATCCAGACTTCTAAGGTTCAGTTTACCAACTGTTGCATCTATACTGCTTGTGGTGGCTTTCATTTTTCTTGTCATGGGATGTCGACGAAGA TACAGAAAAGATCCAATCCCAGAAGCCTTGCCAGTGACAGCTATCCAGAGAAGAATTTCTTACCTAGAACTTCTGCATGCAACGAATGAATTTCATGAGA GTAATCTACTTGGCATAGGGAGTTTTGGCTCTGTCTATCAAGGGAGGCTTCGAGATGGGCTAAATGTAGCTGTCAAGATTTTTAATCTGCAATTGCAAAG AGCATTCAGAAGTTTTGACACAGAGTGCGAAATCATGCGCAACATTAGACACCGCAACCTTGTAAAGATTATCTGCAGTTGCTCTAATCTTGACTTCAAA GCCTTAGTCCTGGAGTACATGCCTAAAGGAAGCTTGGAGAAATGGTTATACTCCCACAACTATTGCTTGGACATCATTCAAAGAGTGAACATAATGATCG ATGTTGCATCAGCATTAGAGTATCTCCATCACGGTTATCCATCTCCTGTGGTGCATTGTGATTTGAAACCGAGCAATGTGTTACTAGATGAAGACATGGT CGCGCATGTATGTGATTTTGGTATTGCAAAACTCTTAGGTGAAAATGAGTCTTTCGCACAAACCAGGACCCTTGCCACAATAGGGTATATGGCACCAGAA TATGGATTGGACGGACTCGTGTCCACGAAGATTGATGTCTATAGCTTTGGAATCATGTTAATGGAGATGCTGACGCGAAAAAGGCCTACCGATGAAATGT TCGAGGGAGAAATGAGCTTGAAGAGATTGGTCAAAGAATCGTTGCCTGATTCAGTAATAGACATTGTGGATAGCAACATGCTGAATAGAGGAGATGGCTA CTCCGTAAAGAAGGAGCACTGTGTGACATCTATAATGGAGTTGGCACTGCAATGTGTCAACGAATCACCTGGAGAGAGGATGGCCATGGTTGAAATCTTG GCAAGGCTTAAAAACATCAAGGCGGAATTCTTGAGAGATTCTGAGAGGCGAAGGCCATAA
AA sequence Show only first row Show all	>Potri.016G029900.3 pacid=42810201 polypeptide=Potri.016G029900.3.p locus=Potri.016G029900 ID=Potri.016G029900.3.v4.1 annot-version=v4.1 MGRVWITILVSMLLMSLPKKCISIPTSNFTDQSALLAFKDHITFDPQNMLTHSWSSKTSFCNWMGVSCSLRRQRVTALDLSSMGLLGTIPPQLGNLSFLQ YLILYNNSFHGDLPSEIGNLRRLQVMDIGSNKLSLVIVPESFGNLHRLEELRFDGNNLTGTIPSTIFNISSLKVLDLMFNGLFGSLPKNMCDHLPRLEML LLSSNQLSGQIPSDLFKCRELQLLWLPYNNFTGVIPEELGFLPMLEVLNLGVNMLSGDLPRSIFNMTSLRTMQICCNNLSGSIPQENSIDLPNLEELQLN LNGITGSMPRFLGNMSRLEILDLSYNKMTGNVLQEFGNLRALQVLSLQSNSFTNHPSSQTLNFITSLTNSRQLKELHIGDNPLDGMLPNSVGNLSSFLTK FYVYASKLKGNIPGEIGNLSNLIVLSLEENSLMGPIPTTVGGLRKIQVLYLHKNNLNGSIPSDICLARRLVDITLNNNVLSGEIPSCIGNLTSLRNLYLH FNILSSTIPMALWSLKDLLILNLHSNFLYGSLPSQVGEMEAAIGIRLSSNQLSGNIPSTIGSLQNLIRFSLSKNSFQGSIPEAFGGLVSLELLDLSQNNL SGEIPKSLEALRYLEFFSVSFNGLQGEIPRGGPFANFTARSFIMNKGLCGPSRLQVPPCSIESRKDSKTKSRLLRFSLPTVASILLVVAFIFLVMGCRRR YRKDPIPEALPVTAIQRRISYLELLHATNEFHESNLLGIGSFGSVYQGRLRDGLNVAVKIFNLQLQRAFRSFDTECEIMRNIRHRNLVKIICSCSNLDFK ALVLEYMPKGSLEKWLYSHNYCLDIIQRVNIMIDVASALEYLHHGYPSPVVHCDLKPSNVLLDEDMVAHVCDFGIAKLLGENESFAQTRTLATIGYMAPE YGLDGLVSTKIDVYSFGIMLMEMLTRKRPTDEMFEGEMSLKRLVKESLPDSVIDIVDSNMLNRGDGYSVKKEHCVTSIMELALQCVNESPGERMAMVEIL ARLKNIKAEFLRDSERRRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G029900 [exp]	0	1
					Potri.019G014310 [exp]	11.48	0.6012
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Potri.007G124900 [exp]	15.03	0.6102
					Potri.015G055951 [exp]	36.41	0.4998
AT5G27820			Ribosomal L18p/L5e family prot...		Potri.005G068300 [exp]	47.96	0.5098
AT1G11040			HSP40/DnaJ peptide-binding pro...		Potri.001G211800 [exp]	70.97	0.5015
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Potri.006G272000 [exp]	78.51	0.5064
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.013G060332 [exp]	81.74	0.4697
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211866 [exp]	83.28	0.4887
AT1G70500			Pectin lyase-like superfamily ...		Potri.015G088600 [exp]	83.68	0.4887
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.016G135900 [exp]	84.09	0.4887

Compare expression of checked genes

Potri.016G029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.