Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16240 266 / 2e-90 ATSYP51, SYP51 syntaxin of plants 51 (.1.2.3) AT1G79590 266 / 2e-90 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) AT1G16230 178 / 2e-56 Target SNARE coiled-coil domain protein (.1) AT1G16225 130 / 9e-38 Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G032800 [exp] 379 / 3e-135 AT1G79590 238 / 2e-79 syntaxin of plants 52 (.1.2) Potri.006G032900 [exp] 369 / 4e-131 AT1G79590 249 / 1e-83 syntaxin of plants 52 (.1.2) Potri.016G030200 [exp] 350 / 1e-123 AT1G79590 246 / 9e-83 syntaxin of plants 52 (.1.2) Potri.004G050800 [exp] 54 / 1e-08 AT1G28490 297 / 2e-102 syntaxin of plants 61 (.1.2) Potri.011G059700 [exp] 48 / 1e-06 AT1G28490 310 / 2e-107 syntaxin of plants 61 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016577 [exp] 265 / 4e-90 AT1G79590 319 / 1e-111 syntaxin of plants 52 (.1.2) Lus10002446 [exp] 240 / 2e-80 AT1G16240 265 / 2e-90 syntaxin of plants 51 (.1.2.3) Lus10017686 [exp] 47 / 6e-06 AT1G28490 299 / 8e-103 syntaxin of plants 61 (.1.2) Lus10018642 [exp] 44 / 4e-05 AT1G28490 334 / 7e-117 syntaxin of plants 61 (.1.2) Lus10039880 [exp] 41 / 0.0004 AT1G28490 271 / 4e-91 syntaxin of plants 61 (.1.2) Lus10014759 [exp] 40 / 0.001 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Potri.016G030100.3 pacid=42810333 polypeptide=Potri.016G030100.3.p locus=Potri.016G030100 ID=Potri.016G030100.3.v4.1 annot-version=v4.1 ATGTCAACGCCATCGGCGTCATGGATGCAAGAATTCAATGAAGCATCAAAACTGGGTGATGAAATTAATGGTATGATTTCTGGGAAGAATTCTTTGCCTT CATCAGGACCAGAAACACAAAGGCATCTTTCCGCAAGTAGGAGAAAGATCACTATTTTAAGAACTAAACTTGATATTTTGCAGTCCCTTTTGTCAGAACT TCCTAGCAAGCAACCAATAACAGGGAAAGAGATGAATCGACGTCAAGACATGCTGAAAAATCTGAGTACTAAAGTTAACCAGATGGCTAGTATTCTCAAT ATGTCCAGTGCTGCTAACAGAGAGAACTTGCTTGGGCCTGATAAGAAGACAGATGATATCATGAATAGAGCAACTGGCTTGAACAACCATGGTCTTGTTG GCTTTCAACGGCAAATTATGAAAGAACAAGATCAAGGCCTTGAGAAATTGGAGGAGACAGTGATAAGTACGAAACACATTGCTTTGGCTGTCAACGAGGA ACTTTCCCTGCACACTAGGCTTCTGGATGACTTGGATGAGCACGTGGATGTAACAAATTCTCGTCTACAGATGGTTCAAAGGAAATTGGCTTTTCTGAAC AAAAGCACCAAGGGCGGCCGCTCTTGCTGGATCTTGTTGGTCATTGCCGTTGTCATTCTAATTGTTGTGATATGGCAACTGTTTCAACATTTGTAA
AA sequence Show only first row Show all	>Potri.016G030100.3 pacid=42810333 polypeptide=Potri.016G030100.3.p locus=Potri.016G030100 ID=Potri.016G030100.3.v4.1 annot-version=v4.1 MSTPSASWMQEFNEASKLGDEINGMISGKNSLPSSGPETQRHLSASRRKITILRTKLDILQSLLSELPSKQPITGKEMNRRQDMLKNLSTKVNQMASILN MSSAANRENLLGPDKKTDDIMNRATGLNNHGLVGFQRQIMKEQDQGLEKLEETVISTKHIALAVNEELSLHTRLLDDLDEHVDVTNSRLQMVQRKLAFLN KSTKGGRSCWILLVIAVVILIVVIWQLFQHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.016G030100 [exp]	0	1
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Potri.004G086300 [exp]	2.00	0.7167
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.002G072100 [exp]	8.12	0.6444
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Potri.007G055100 [exp]	11.40	0.6664
AT2G25355			PNAS-3 related (.1.2)		Potri.015G075400 [exp]	18.89	0.7045
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	23.23	0.7009
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	33.04	0.6741
AT5G06610			Protein of unknown function (D...		Potri.016G062400 [exp]	34.81	0.6632
AT1G12000			Phosphofructokinase family pro...		Potri.004G003800 [exp]	37.06	0.6805
AT1G66180			Eukaryotic aspartyl protease f...		Potri.004G085000 [exp]	39.33	0.6559
AT1G47740			PPPDE putative thiol peptidase...		Potri.002G134200 [exp]	41.56	0.5978

Compare expression of checked genes

Potri.016G030100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.