Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79590 247 / 6e-83 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) AT1G16240 233 / 1e-77 ATSYP51, SYP51 syntaxin of plants 51 (.1.2.3) AT1G16230 141 / 6e-42 Target SNARE coiled-coil domain protein (.1) AT1G16225 104 / 1e-27 Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G032900 [exp] 343 / 7e-121 AT1G79590 249 / 1e-83 syntaxin of plants 52 (.1.2) Potri.006G032800 [exp] 314 / 1e-109 AT1G79590 238 / 2e-79 syntaxin of plants 52 (.1.2) Potri.016G030100 [exp] 313 / 6e-109 AT1G79590 265 / 3e-90 syntaxin of plants 52 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016577 [exp] 219 / 4e-72 AT1G79590 319 / 1e-111 syntaxin of plants 52 (.1.2) Lus10002446 [exp] 195 / 1e-62 AT1G16240 265 / 2e-90 syntaxin of plants 51 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Potri.016G030200.1 pacid=42809223 polypeptide=Potri.016G030200.1.p locus=Potri.016G030200 ID=Potri.016G030200.1.v4.1 annot-version=v4.1 ATGGCATCGCCATCAGAATTATGGATGCAAGAATTCAATGAAGCATCAAAACTTGGTGATGAAATTAGTAATATGATTTCTGGGAAGAATTCTTTGCCTC AATCTGGACCAGAAACACAGCGACATCTCTCTGCGATACGGAGAAAGGCCACTATTTTGACAACCAAACTTGATAGTCTGCAGTCCCTTTTGTCAGCACT TCCAGGCAAACAGCCAATATCAGGGAAAGAGATAAATCGGCGTCAAGAGATGCTGAAAAATCTGAGTACAAAAGTTAACCAGATGTCTACTGCTCTCAAT ATGGCCAGTGCTGCTAACAGAGAGAACTTGCTTGGGTCTGATAGCAAGACAGATGATATTATATATAGAGCATCTGGCTTGGACAACCAGGGCCTTGTTG GTTTTCAACGGCAAACCATGAGAGAACAAGATGAAGGCCTTGAGAAATTGGACGAGACAGTGACAAGTACAAAACACATTGCATTGGCTGTCAACGAGGA ACTTACCCTACACACTAGGCTTCTGGATGACTTAGACGAGCATGTGGATGTAACGAATTCCCGTATGCAGAGGGTTCAAAGGAATTTGGCTTTTCTGAAC AAACGCACCAAAAGTGGCTGTGCTTGCTGGATCTTTCTGGTCATTGCTATTGTCATTCTAATTGTTGTCGTGTTGGTATTGATTAAATATTTGTAA
AA sequence Show only first row Show all	>Potri.016G030200.1 pacid=42809223 polypeptide=Potri.016G030200.1.p locus=Potri.016G030200 ID=Potri.016G030200.1.v4.1 annot-version=v4.1 MASPSELWMQEFNEASKLGDEISNMISGKNSLPQSGPETQRHLSAIRRKATILTTKLDSLQSLLSALPGKQPISGKEINRRQEMLKNLSTKVNQMSTALN MASAANRENLLGSDSKTDDIIYRASGLDNQGLVGFQRQTMREQDEGLEKLDETVTSTKHIALAVNEELTLHTRLLDDLDEHVDVTNSRMQRVQRNLAFLN KRTKSGCACWIFLVIAIVILIVVVLVLIKYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.016G030200 [exp]	0	1
AT2G35736			unknown protein		Potri.001G123000 [exp]	21.11	0.8242
					Potri.006G233301 [exp]	26.07	0.7894
AT2G23090			Uncharacterised protein family...		Potri.014G018100 [exp]	28.61	0.8067
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.003G128600 [exp]	36.00	0.8114
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032900 [exp]	39.88	0.7858
AT3G48880			RNI-like superfamily protein (...		Potri.016G019500 [exp]	53.51	0.7463
AT1G32460			unknown protein		Potri.001G145066 [exp]	58.97	0.7880
AT5G39220			alpha/beta-Hydrolases superfam...		Potri.017G093500 [exp]	65.72	0.7974
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	67.88	0.7997	Pt-ARF1.7
AT3G50845			Protein of unknown function (D...		Potri.005G123100 [exp]	74.75	0.7704

Compare expression of checked genes

Potri.016G030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.