Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45790 466 / 1e-162 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 229 / 8e-71 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 226 / 1e-69 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 140 / 5e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT2G31290 133 / 2e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 132 / 4e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 131 / 8e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 127 / 1e-32 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 120 / 1e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 113 / 2e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245100 [exp] 232 / 8e-72 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 220 / 1e-66 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G244900 [exp] 189 / 8e-56 AT1G06440 503 / 7e-180 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 151 / 1e-40 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 143 / 6e-38 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.005G191100 [exp] 136 / 1e-35 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 131 / 1e-33 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 121 / 3e-30 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 119 / 1e-29 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005755 [exp] 222 / 3e-67 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10041673 [exp] 219 / 2e-66 AT1G06440 495 / 2e-175 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027440 [exp] 217 / 2e-65 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 150 / 1e-40 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 148 / 2e-40 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10016529 [exp] 139 / 2e-36 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 134 / 2e-34 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 131 / 7e-34 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10017896 [exp] 125 / 1e-30 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 124 / 1e-30 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.016G030300.1 pacid=42809698 polypeptide=Potri.016G030300.1.p locus=Potri.016G030300 ID=Potri.016G030300.1.v4.1 annot-version=v4.1 ATGATCCTTTCGAAAGTCAGCAAGCACCACTGCCTTTTACAGTTCAGAATCCACATAAATCCTCAAGAAACAAACCTTCCGAAAATCCCTTTTGGTCCTT TCAATTTATTCATCCAAAGAAGATGGAAAAAGCCAGCAAACACAGCACAAACTCGGTTAGAATCAAGAACCATAGATTCCAAACTCAACAGACTAACAAC CTACCTCAAGAAACTCAAAACCATCCTCAAAATCTACGAACTCATGTCAAATCGAAAGAGGGGTCCTTTTGTATCCCTGCAGTTGATGTCCAGATGGACA AATATAGTGGGGCTGAATGTAGGTATGGGTGAGTTTGTGCATAAGCACCCCCATGTGTTTGATGTATTTACACACCCGGTTAGGAGGAATTTGTGTTGTA GGATTAGTGGGAAATTCAAGGGTTTGGTGAGTGAAGAAGAGGGTCTTGTGAAAGATTGTGAATTGGAGTGTGCGAAGAGAGTTAAAAGGTTGTTAATGAT GTCTAAAAACGGGAGACTTCATGTTCATGCTTTGAGGTTGATTAGGAGAGAATTGGGGTTGCCTGAGGATTTTAGGGAGTCAGTTTTAGGGAAGTATAAG GAAGATTTTAGGCTGGTTGATTTGGAGATTGTTGAATTGGTTGATAAAGATGAGAACTTCGGGGTGGCTGAAGTTGAGAAATGGAGAGAGAAAGAGTATA GAGAGAAGTGGTTGAGTGAGTTTGAGACGAAGTTTGCATTTCCTATCAATTTCCCTACGGGGTTTAAGATTGAAAGGGGGTTTAGAGAGAAGTTGAAGAA TTGGCAAATGCTTCCTTATTTGAAGCCTTATGAGGGAAATGAGGTTGTTCAGGTGGGCGCTTGTGGTGGGAAGAATAGATATGAGAAACGGGCGGTAGCG ATGATTCATGAGTTGTTGAGTTTGACAGTGGAGAAGATGGTTGAGGTTGAGAGATTGGCTCATTTTAAAAAGGATTTTGGTATGGAAGTGAATGTGCGCG AGTTGTTATTGAAAAATCCTGGGATTTTCTATATATCAACTAAGGGAAGCACTCATACTGTTATTCTTAGGGAAGCATATAGTAAAGGTTGTTTGATTGA GCCAAATCCGATTTATGTTGTTAGGAGGAAGATGTTGGATCTTGTATTGCTGGGTTGTAGAAACACAAGAGAGTTGCAAGCTGAGGAAGAAATTAAGAAC GGGAGTGACAGTCTCATTAGGAAAGCATTTGCTGGAAATACAACAGTTGGAGAGTGGGTTGTCCCAATTTTAGAGAGTTTTGACAATGTGAATGACCATG ATGATCCAGGTGAAATCATTGATGCATCAGAGGAGTTTGATGGATGCTAG
AA sequence Show only first row Show all	>Potri.016G030300.1 pacid=42809698 polypeptide=Potri.016G030300.1.p locus=Potri.016G030300 ID=Potri.016G030300.1.v4.1 annot-version=v4.1 MILSKVSKHHCLLQFRIHINPQETNLPKIPFGPFNLFIQRRWKKPANTAQTRLESRTIDSKLNRLTTYLKKLKTILKIYELMSNRKRGPFVSLQLMSRWT NIVGLNVGMGEFVHKHPHVFDVFTHPVRRNLCCRISGKFKGLVSEEEGLVKDCELECAKRVKRLLMMSKNGRLHVHALRLIRRELGLPEDFRESVLGKYK EDFRLVDLEIVELVDKDENFGVAEVEKWREKEYREKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQMLPYLKPYEGNEVVQVGACGGKNRYEKRAVA MIHELLSLTVEKMVEVERLAHFKKDFGMEVNVRELLLKNPGIFYISTKGSTHTVILREAYSKGCLIEPNPIYVVRRKMLDLVLLGCRNTRELQAEEEIKN GSDSLIRKAFAGNTTVGEWVVPILESFDNVNDHDDPGEIIDASEEFDGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45790			Ubiquitin carboxyl-terminal hy...		Potri.016G030300 [exp]	0	1
AT4G25390			Protein kinase superfamily pro...		Potri.015G134100 [exp]	2.00	0.8373
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	6.55	0.8418
AT5G27330			Prefoldin chaperone subunit fa...		Potri.005G040500 [exp]	16.24	0.7612
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	18.97	0.7745
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.006G181100 [exp]	21.16	0.8150
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	24.12	0.8114
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	24.37	0.8292
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	26.36	0.8122
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.002G039801 [exp]	27.74	0.7679
AT3G47530			Pentatricopeptide repeat (PPR)...		Potri.003G074500 [exp]	34.19	0.8109

Compare expression of checked genes

Potri.016G030300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.