Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56900 653 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 50 / 2e-06 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G44530 50 / 2e-06 HIRA homolog of histone chaperone HIRA (.1.2) AT5G24320 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 42 / 0.0006 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G144800 [exp] 52 / 6e-07 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.004G184900 [exp] 52 / 8e-07 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.007G050100 [exp] 46 / 4e-05 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 45 / 6e-05 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.012G065200 [exp] 42 / 0.0007 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 42 / 0.0009 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 42 / 0.001 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010447 [exp] 359 / 4e-117 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10012097 [exp] 158 / 2e-46 AT3G56900 158 / 7e-47 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020585 [exp] 53 / 5e-07 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10004893 [exp] 52 / 1e-06 AT3G44530 1389 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10021059 [exp] 45 / 8e-05 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024972 [exp] 43 / 0.0004 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10010384 [exp] 42 / 0.001 AT5G67320 572 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10006916 [exp] 42 / 0.001 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G030400.2 pacid=42809636 polypeptide=Potri.016G030400.2.p locus=Potri.016G030400 ID=Potri.016G030400.2.v4.1 annot-version=v4.1 ATGCCTTCCTTTCCACTGCAAGGCTCAGTCACCATCTGCGAAATCAATCGAACCCTAATTGTAGCTGAAGCCTTGTCTGATGATCGAGCCAAGGATGCTT ATGGAAAAATTCTAGGAATGGTGTTCAGTCCAATTCCGTTTCAACCAGAGCAGTTGGGATCGACTGGCGAAAATCAGGAATCTGAACACCAGGAAAGAAA CAATGGAGAGAGTGTTGAGAGGAAAGGTTTGATGAAATCATTGCAATACCTTGTTAACGAGTCGATCAAGCGCATGTTTTATCCTAATTGTGTACACTTG TTACCGGAGATTGATCTTCAAGGAGTGAGCTGGCACCAGCATAGACATATTATTGCATTTATTTCGGGTCCGAACCAGGTTATAGTTCGTGATTATGAAG ATTCAGAAGGGAAGGATGCCTGTGTTTTAAGCAATGGGGCTCAACAAGATATTAGGGCTCTTGAGTGGAGACCAAATGGTGGAAAGTCACTTTCTGTAGC GTGCAAGGGTGGAATCTGCATATGGGCTGCTTCTTATCCAGGTAATCCAGCCACTGTGAGGCCTGGTGCTGCTTCCTCCTTGGGAACTCTTACTAGAGGC TCTGGAGGTCGATGGACTCTAGTGGATTTTCTTCGTAGTCACAGTGATGAGCAAACAAGTGCAATATCATGGAGTCCTGATGGAAGATATTTGGCATCTG CATCATGTGAGAGCTCTTCGTTCACCATATGGGATGTCTCACAAGGTCTGGGGACACCCATACGACGTGGATTAGGAGGCATATCGTTACTAAAATGGTC ACCTACTGGAGATTACTTTTTTGCTGCAAAATTTGATGGAACATTTTATCTCTGGGAGACAAACACATGGACATCTGAACCTTGGTCTTCGACTAGTGGC TTTGTCACGGGAGCAACATGGGATCCTGATGGGCATATAATATTGATTGCTTTCTCTGGATCTTTAACATTGGGTTCCATTCATTTTTCATCAAAGCCTC CATCTTTAGATGCACATCTGTTACCAGTTGATTTACCAGAGATAACAACCATGACGGGCAGTGAGGGAATTGAGAAGATAGCTTGGGATGCTTCTGGTGA AAGACTGGCTGTATCTTATAAAGGAGGGGATGATAATTACAAAGGTCTTGTTGCCATATATGATGTTAGAAGGACTCCCCTGATTTCTGCATCACTAGTT GGATTTATTAGAGGGCCTGGAGACAATCCAAAGCCAATTGCATTTTCGTTTCATGACAAGTTCAAACAGGGACCATTGCTTTCTGTGTGTTGGAGCAGTG GATTTTGCTGTACCTATCCTCTAATATTTCACTCCCATAGTCTTCCATAA
AA sequence Show only first row Show all	>Potri.016G030400.2 pacid=42809636 polypeptide=Potri.016G030400.2.p locus=Potri.016G030400 ID=Potri.016G030400.2.v4.1 annot-version=v4.1 MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTGENQESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHL LPEIDLQGVSWHQHRHIIAFISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKGGICIWAASYPGNPATVRPGAASSLGTLTRG SGGRWTLVDFLRSHSDEQTSAISWSPDGRYLASASCESSSFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSG FVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTMTGSEGIEKIAWDASGERLAVSYKGGDDNYKGLVAIYDVRRTPLISASLV GFIRGPGDNPKPIAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFHSHSLP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56900			Transducin/WD40 repeat-like su...		Potri.016G030400 [exp]	0	1
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	5.91	0.8387
AT1G27070			5'-AMP-activated protein kinas...		Potri.010G034600 [exp]	6.63	0.7690
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Potri.018G114900 [exp]	6.70	0.7985
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.017G120100 [exp]	8.12	0.8162
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	10.95	0.8002
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	11.09	0.8313
AT1G79150			binding (.1)		Potri.005G096900 [exp]	11.13	0.8180
AT1G31660			unknown protein		Potri.011G112500 [exp]	13.60	0.8167
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	15.81	0.7956
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	16.52	0.8123

Compare expression of checked genes

Potri.016G030400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.