Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40860 921 / 0 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) AT5G24940 172 / 4e-47 Protein phosphatase 2C family protein (.1) AT4G31750 165 / 6e-46 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 166 / 2e-45 Protein phosphatase 2C family protein (.1) AT5G53140 163 / 5e-44 Protein phosphatase 2C family protein (.1) AT1G43900 157 / 2e-42 Protein phosphatase 2C family protein (.1) AT2G33700 145 / 3e-38 Protein phosphatase 2C family protein (.1) AT1G48040 145 / 8e-38 Protein phosphatase 2C family protein (.1) AT2G25620 144 / 2e-37 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G51470 141 / 1e-36 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013900 [exp] 168 / 3e-47 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 167 / 8e-47 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 166 / 3e-46 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G186001 [exp] 162 / 5e-45 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 159 / 2e-43 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 159 / 2e-43 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.005G253700 [exp] 150 / 6e-40 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 146 / 3e-38 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 145 / 4e-38 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002993 [exp] 944 / 0 AT2G40860 899 / 0.0 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Lus10024474 [exp] 419 / 5e-143 AT2G40860 404 / 1e-137 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Lus10024475 [exp] 277 / 4e-88 AT2G40860 344 / 8e-115 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Lus10020104 [exp] 166 / 4e-46 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 164 / 2e-45 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 166 / 3e-45 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 163 / 5e-45 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 155 / 6e-43 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 155 / 8e-43 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10037832 [exp] 146 / 3e-38 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.016G030800.2 pacid=42809376 polypeptide=Potri.016G030800.2.p locus=Potri.016G030800 ID=Potri.016G030800.2.v4.1 annot-version=v4.1 ATGGGGCTAGAAATTGTGGAGCCAAATTCCTGCATAAGAGGATGCTGTACTAGCAATTCAATCCCACTTCACCTCCCTCCTTCTTCCTACACCCTCCTCT CTCCAATTGCCAAAGGGGCTGAGAGTGTGGTTTATGGAGCTGTTTTGGATGGGAGAAAAGTTGCTGTTAAAAAACCAATCTTGTCTACTTCTGAGGACAT TGATAAGTTCCATAAGGAGCTTCAACTCCTATGCAAGCTAGATCATCCTGGAATTGCCAAGCTGGTTGCAGCTCATGCAAAGCCTCCAAATTATATGTTC TTTTTTGAATTCTATGAATCTGGTAATCTTTCTGAGAAATTACATGTGGAAGAATGGAGTCCAAATATGGATCAGGTGCTCATGATCACAGTCCAGCTGG CAAAGGCTTTGCAATATCTGCATAACCACGAGATTGTACATAGGGATGTGAAACCAGCAAATATTCTTCTTGATGAAAACCTTTGTCCACACTTAGCAGA TTTTGGTTTGGCAGAATACCAGAAAAATCTTAAGGGAGTTTCTCTTGAGAACTGGAGATCATCCGGAAAGCCAACTGGTGGTTTCCATAAAAAGAACATG GTTGGCACACTCATTTATATGGCTCCAGAAATATTGAGGAAGGAGATACATACTGAAAAATCAGATGTCTATAGTTTCGGAATATCCATCAATGAGCTTC TTACTGGTGTCGTCCCATATACTGATCTCCGTGCAGAAGCTCAGGCCCACACTGTACTGGAGATGAACTATACTGAACAGCAACTTACAGCATCTGTGGT GTCTGGTAAATTACGACCTGCTCTTGCTGGTCTGGGTTCGGGTGCTTCAGCAAGCATACTTTCATTAATACAGAGATGTTGGGATGACAATCCTCAAAAT AGACCTTCTTTTACTGATATACTATTGGAACTTGATCCAATCTTGGAGAGTAGAAAGAAATCAATTGGAAAAGATTTTTCCCTTGACAAATATTCTATTT CACATGGAGATCAGCCAGCAGATAGTGCCAAGAATCTTACAACGTACCAGGAGATTATTAACTGGTCCACTCAGGGAGAAATTCTATCAAAGGCTCCTCC TGCAGTAGATTCCAGTTTAAGAATTTGGCTTGATTGTTCAAATGTTGGTTTGGCTTATCGTCCAATACTTTCCTGGGGATCCTTTGCCACATGCGGTAAA AGGGAGACTATGGAAGATACCCACTTCCTTATGCCCCATATGTGCAACGAAAAGGATATCCATGCTTTTGGTATCTTTGATGGTCATAGAGGTGCAGCAG CTGCTGAGTTTTCAGCTCGAGCATTACCTGGATTTCTGCAAAGTACTGGTTCTGCCAGCAGCCCCAGAAATGCATTAGTTGAAGCATTTGTTAGTACAGA TGCTGCATTCAGAAATGAACTGGATACTCATCGTAAATCTAGGAGAGTTGTTCAGAAAGACTGGCATCCTGGCTGCACTGCCATTGTTGCTTTAATAGTT ACAAACAAGCTTTTTGTTGCAAATGCTGGTGATTGCAAGACAATTTTATGTCGGGCTGGCAAGGCCTTTCCTCTAAGTAAGGATCATGTCGCAAGCTATA TTGAGGAGAGGGAGCGTGTGCTTAGTGCTGGGGGACAAGTAAAATGGCAAATTGATACTTGGAGGGTTGGACATGCTGCACTCCAGGTCACTCGATCCAT CGGTGATGATGATCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACCGAAACTGTACTGTCAGCGGAAGATGAATTCCTGGTGATGGGCAGCGATGGG CTTTGGGATGTCATGAGTAGTGCAGATGTCATAAGCATAATCAAAGACACCGTCAAAGAACCTGGTATGTGCTCCAAGAGATTGGCAACAGAAGCTGCAG AACGAGGCAGCAAAGACAACATTACGGTCATTGTTGTCTTCCTGCGCCCAGTATCGACAGCTGAGAGAATTTATTAG
AA sequence Show only first row Show all	>Potri.016G030800.2 pacid=42809376 polypeptide=Potri.016G030800.2.p locus=Potri.016G030800 ID=Potri.016G030800.2.v4.1 annot-version=v4.1 MGLEIVEPNSCIRGCCTSNSIPLHLPPSSYTLLSPIAKGAESVVYGAVLDGRKVAVKKPILSTSEDIDKFHKELQLLCKLDHPGIAKLVAAHAKPPNYMF FFEFYESGNLSEKLHVEEWSPNMDQVLMITVQLAKALQYLHNHEIVHRDVKPANILLDENLCPHLADFGLAEYQKNLKGVSLENWRSSGKPTGGFHKKNM VGTLIYMAPEILRKEIHTEKSDVYSFGISINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTASVVSGKLRPALAGLGSGASASILSLIQRCWDDNPQN RPSFTDILLELDPILESRKKSIGKDFSLDKYSISHGDQPADSAKNLTTYQEIINWSTQGEILSKAPPAVDSSLRIWLDCSNVGLAYRPILSWGSFATCGK RETMEDTHFLMPHMCNEKDIHAFGIFDGHRGAAAAEFSARALPGFLQSTGSASSPRNALVEAFVSTDAAFRNELDTHRKSRRVVQKDWHPGCTAIVALIV TNKLFVANAGDCKTILCRAGKAFPLSKDHVASYIEERERVLSAGGQVKWQIDTWRVGHAALQVTRSIGDDDLKPAVTAEPEITETVLSAEDEFLVMGSDG LWDVMSSADVISIIKDTVKEPGMCSKRLATEAAERGSKDNITVIVVFLRPVSTAERIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	0	1
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	1.41	0.8110
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.001G183700 [exp]	3.46	0.7144
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	5.29	0.7683
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.015G120400 [exp]	7.93	0.7209
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	8.06	0.7515	PDF1.2
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	8.60	0.7768
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	8.83	0.7329
AT5G64460			Phosphoglycerate mutase family...		Potri.001G286000 [exp]	9.32	0.7717
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.018G054700 [exp]	13.67	0.6905
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.010G027100 [exp]	15.49	0.7236	AHP1.1

Compare expression of checked genes

Potri.016G030800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.