Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12490 244 / 5e-82 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) AT5G05110 239 / 4e-80 Cystatin/monellin family protein (.1) AT2G40880 139 / 6e-42 ATCYSA, FL3-27 cystatin A (.1) AT5G12140 103 / 2e-28 ATCYS1 cystatin-1 (.1) AT5G47550 61 / 8e-12 Cystatin/monellin superfamily protein (.1) AT2G31980 58 / 1e-10 AtCYS2 PHYTOCYSTATIN 2 (.1) AT4G16500 55 / 1e-09 Cystatin/monellin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G033201 [exp] 350 / 2e-124 AT3G12490 251 / 8e-86 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.003G192200 [exp] 261 / 9e-89 AT3G12490 303 / 6e-105 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.001G032900 [exp] 258 / 9e-88 AT3G12490 276 / 2e-95 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.001G225800 [exp] 125 / 4e-37 AT3G12490 142 / 4e-44 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.009G022300 [exp] 124 / 1e-36 AT3G12490 134 / 4e-41 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.006G014500 [exp] 52 / 8e-09 AT5G47550 100 / 9e-29 Cystatin/monellin superfamily protein (.1) Potri.002G235800 [exp] 47 / 8e-07 AT2G31980 96 / 5e-26 PHYTOCYSTATIN 2 (.1) Potri.014G149300 [exp] 42 / 4e-05 AT2G31980 90 / 1e-23 PHYTOCYSTATIN 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026117 [exp] 238 / 3e-79 AT3G12490 261 / 2e-88 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Lus10008702 [exp] 222 / 7e-73 AT3G12490 241 / 9e-81 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Lus10026779 [exp] 119 / 2e-34 AT3G12490 129 / 2e-39 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Lus10041257 [exp] 53 / 8e-09 AT2G31980 72 / 9e-17 PHYTOCYSTATIN 2 (.1) Lus10010495 [exp] 40 / 0.0003 AT5G47550 73 / 1e-17 Cystatin/monellin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0121 [poplar] [flax] Cystatin PF00031 [poplar] [flax] Cystatin Cystatin domain
Representative CDS sequence Show only first row Show all	>Potri.016G030900.1 pacid=42809060 polypeptide=Potri.016G030900.1.p locus=Potri.016G030900 ID=Potri.016G030900.1.v4.1 annot-version=v4.1 ATGAAGAATAAATCCTCTTTAATAATCTTGAGTGTCTTGGTTTTGCTCTGTGGGTGTTATACTGAACTGGGTCTTTGCGGACAGGACAACTTCTTGAAGA TGAAGCTTGGTGGTGTTCATGACTGTAAAGGTTCTCAAAATAGTGCAGAGATTGATAGCCTCGCTCGTTTTGCTGTCCAGGAACATAACAAGAAAGAGAA TGCTATTCTTGAGTTTGTGAGGGTGTTGAAGGCGAAAGAGCAGGTGGTTGCTGGTAAGCTATACCACCTTACTGTAGAGGCAACTGATGCTGGTAATAAT AAGATGTATGAAGTTAAAGTCTGGGTGAAGCCGTGGATGAACTTCAAGCAGTTGCAGGAATTCAAGCATGTTGAAGGGGGTACTTCCTCTGACCTCGGTG TTAAACCAGATGATCATGGATCAGGATGGCAACTGGTGCCAACAAATGATCTTGAGGTCCAAGATGCAGCAAATCATGCTGTTAAGTCCATTCAGAAGAG ATCCAACTCATTGTCCCCATATGAACTTGTAGAGATCCTTCTGGCGAAAGCCAAGGTCATTGAAGATTATGCCAAATTCAATCTGCTTCTGAAATTGAGG AGGGGAATAAAAGAAGAAAATTTCAAGGTTGAAGTAATTAAGAACATGGAAGGAAAGTTTCATGTGAATTTGATGCCATAA
AA sequence Show only first row Show all	>Potri.016G030900.1 pacid=42809060 polypeptide=Potri.016G030900.1.p locus=Potri.016G030900 ID=Potri.016G030900.1.v4.1 annot-version=v4.1 MKNKSSLIILSVLVLLCGCYTELGLCGQDNFLKMKLGGVHDCKGSQNSAEIDSLARFAVQEHNKKENAILEFVRVLKAKEQVVAGKLYHLTVEATDAGNN KMYEVKVWVKPWMNFKQLQEFKHVEGGTSSDLGVKPDDHGSGWQLVPTNDLEVQDAANHAVKSIQKRSNSLSPYELVEILLAKAKVIEDYAKFNLLLKLR RGIKEENFKVEVIKNMEGKFHVNLMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.016G030900 [exp]	0	1
AT1G16840			unknown protein		Potri.010G252800 [exp]	1.41	0.8037
AT1G17080			Ribosomal protein L18ae family...		Potri.001G380200 [exp]	2.82	0.7930
					Potri.001G323200 [exp]	3.00	0.8447
AT5G24870			RING/U-box superfamily protein...		Potri.006G274700 [exp]	5.47	0.7964
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.009G018900 [exp]	7.93	0.7467
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.003G097300 [exp]	10.39	0.7160	Pt-XTR4.1
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.001G075600 [exp]	11.35	0.7127
AT1G12020			unknown protein		Potri.004G001800 [exp]	12.36	0.7076
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	21.49	0.7136
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.006G086000 [exp]	23.47	0.7196

Compare expression of checked genes

Potri.016G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.