Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40890 776 / 0 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT1G74550 467 / 2e-161 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT1G74540 462 / 3e-159 CYP98A8 cytochrome P450, family 98, subfamily A, polypeptide 8 (.1) AT5G07990 314 / 2e-101 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37360 298 / 3e-95 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37430 291 / 9e-93 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT5G57220 287 / 3e-91 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT2G45550 282 / 4e-89 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 278 / 2e-87 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G12300 278 / 2e-87 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G031100 [exp] 918 / 0 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G033300 [exp] 837 / 0 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.001G167900 [exp] 351 / 1e-115 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 345 / 1e-113 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 336 / 9e-110 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 332 / 2e-108 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 326 / 4e-106 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 323 / 5e-105 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 320 / 1e-103 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033524 [exp] 788 / 0 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020847 [exp] 782 / 0 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020850 [exp] 618 / 0 AT2G40890 666 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033522 [exp] 518 / 1e-173 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013150 [exp] 344 / 4e-113 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 328 / 1e-106 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021158 [exp] 322 / 3e-104 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 317 / 3e-102 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 298 / 5e-95 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 295 / 7e-94 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.016G031000.2 pacid=42809609 polypeptide=Potri.016G031000.2.p locus=Potri.016G031000 ID=Potri.016G031000.2.v4.1 annot-version=v4.1 ATGGCTCTGCCTCTGTTAGTATTAGTTTCGATCTTTGTTCTCGTTCTTGCATACATTCTGTACCAGAGGCTGAGGTTCAAGCTACCGCCTGGTCCACGAC CGTGGCCGATTGTTGGGAACCTCTATGATGTCAAGCCTATTATGTTCAGATGTTTTGCAGAGTGGGCTCAGGCTTACGGACCAATTGTTTCAGTTTGGTT TGGTTCAACTTTGAATGTAGTTGTGTGTAATGCGGAACTGGCCAGGCAAGTTCTCAAAGAGAATGACCAGCAGCTGGCTGATAGGCATAGGACTAGATTT CTCGCCAGGTTTAGTAGAGGTGGCGAGGACCTCATATGGGCTGACTATGGTCCTCACTACGTGAAGCTTAGGAAAGTGTCTACTCTTGAGCTCTTCTCAG CAAAGAGACTTGAGGAACTCAGACCTATTAGAGAAGATGAGGTTTCTTTCATGGCAGAATCCATTTTCAAGGATTGCACCAATCCAGAAAACCATGGAAA AATCTTGTTGGTGAAGAAATATTTGGGAGATGTGGCTTGGAATAACATTACAAGACTAGCATTTGGAAAGCGGTTCATGAATTCAGAGGGGATAATTGAT GAGCAAGGCCAAGAATTCAAGGCAATTGTTTCCGATGGATTTAGGCTTGGTGCATCACATTCCATGGCCGAGCACATTCCATGGCTTCAATGGATGGTTC GACTAGAGGAAGAGGCTTTTGCCAAGCTTAATGCTCGTCGAGACAGGCTGGTTAGATCTATCATGGAGGAACATAACAATGCACGCAAGAAAAGTGGTGG TGCCAAGAATCATTTTGTTGATGCATTGCTAACACTGCAAGAAAAATATGACCTCAGCGAGGTCACATTTATTAGTCTCCTATGGGACATGATCAGTGCT GGCATGGATACGACAGCAATCTCAGTGGAGTGGGCAATGGCTGAGCTACTCAAGAACCCAAGGGTTCAACAGAAGGCTCAAGATGAGCTAGACCGAGTGG TTGGGTTCGAACGTGTCATGACTGAGGCAGATTTCCCAAATCTCCCTTACCTGCAAGCTGTAGTCAAGGAATCGCTGAGGTTGCACCCACCAACACCACT GATGCTACCTCATCGTGCCAATACTACTGTTAAAATCGGCGGCTATGACATCCCTAGGGGATCAGTTGTTCACGTAAACGTATGGGCTGTGGCTCGTGAT CCGGCTTTGTGGAAGAACCCTTTAGAGTTCCGGCCGGAGAGGTTCTTTGAGGAGGATGTCGACATGAGAGGTCATGATTTCAGGCTACTTCCATTCGGAG CTGGAAGAAGGGTGTGTCCTGGTGCACAGCTTGGTATCAATCTGGTCACGTCTATAATCGGTCATCTGCTTCACCATTTTCATTGGACCACCCCTGATGG TGTCAAGCCAGAGGAAATTGACATGTCAGAAAGACCTGGACTTGTCACTTATATGATGACCCCATTACAAGCAGTGGCCACTCCTCGCCTGCCTTCACAC TTGTACAAACGGATGGCTTCAGATATGTGA
AA sequence Show only first row Show all	>Potri.016G031000.2 pacid=42809609 polypeptide=Potri.016G031000.2.p locus=Potri.016G031000 ID=Potri.016G031000.2.v4.1 annot-version=v4.1 MALPLLVLVSIFVLVLAYILYQRLRFKLPPGPRPWPIVGNLYDVKPIMFRCFAEWAQAYGPIVSVWFGSTLNVVVCNAELARQVLKENDQQLADRHRTRF LARFSRGGEDLIWADYGPHYVKLRKVSTLELFSAKRLEELRPIREDEVSFMAESIFKDCTNPENHGKILLVKKYLGDVAWNNITRLAFGKRFMNSEGIID EQGQEFKAIVSDGFRLGASHSMAEHIPWLQWMVRLEEEAFAKLNARRDRLVRSIMEEHNNARKKSGGAKNHFVDALLTLQEKYDLSEVTFISLLWDMISA GMDTTAISVEWAMAELLKNPRVQQKAQDELDRVVGFERVMTEADFPNLPYLQAVVKESLRLHPPTPLMLPHRANTTVKIGGYDIPRGSVVHVNVWAVARD PALWKNPLEFRPERFFEEDVDMRGHDFRLLPFGAGRRVCPGAQLGINLVTSIIGHLLHHFHWTTPDGVKPEEIDMSERPGLVTYMMTPLQAVATPRLPSH LYKRMASDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.016G031000 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G137950 [exp]	14.73	0.7614
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	34.40	0.8315
					Potri.015G005301 [exp]	73.56	0.7721
AT3G10310			P-loop nucleoside triphosphate...		Potri.006G048650 [exp]	85.07	0.8004
AT5G18470			Curculin-like (mannose-binding...		Potri.013G050500 [exp]	90.80	0.8100
AT2G04039			unknown protein		Potri.002G217400 [exp]	98.00	0.7879
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Potri.005G185700 [exp]	205.34	0.7500

Compare expression of checked genes

Potri.016G031000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.