Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LEC.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65600 260 / 5e-82 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 255 / 3e-80 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 233 / 3e-71 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 231 / 1e-70 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 226 / 3e-69 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 225 / 1e-68 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01560 221 / 9e-67 LECRKA4.3 lectin receptor kinase a4.3 (.1) AT5G01550 219 / 4e-66 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT5G03140 216 / 8e-65 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 212 / 1e-63 RLK receptor lectin kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283200 [exp] 298 / 3e-97 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 298 / 3e-96 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 297 / 1e-95 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 297 / 1e-95 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 296 / 2e-95 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 295 / 6e-95 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 293 / 6e-95 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 291 / 3e-93 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 283 / 1e-91 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007075 [exp] 278 / 6e-92 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 265 / 1e-83 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 262 / 1e-82 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 263 / 2e-82 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 263 / 3e-82 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 255 / 1e-81 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 259 / 7e-81 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 258 / 1e-80 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 257 / 1e-80 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 259 / 6e-80 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G031300.1 pacid=42809078 polypeptide=Potri.016G031300.1.p locus=Potri.016G031300 ID=Potri.016G031300.1.v4.1 annot-version=v4.1 ATGGATGGAAATTGCACTAACCCTCGAAAGTTTTCGTACCAAACATTGGCTTGTGCCACTAATCATTTCTCAGAGAAAGACAAACTTGGGGAAGGAGCAA CTGGTTCAGTTTTTAAGGGATTCTTAAGGGAGTTGAGCTGCTCTGTGGCGGTGAAGAGGATACTATTTGGTTCTAAATATGGCATGGAGTCATACCTGCC AGAAGTGAAGGTCTTAACTAAACTGAAGCATGAAAATTTGGTCAATCTCGTTGGCTGGAGCTGCAACATGAAAGAACTTCTCATTGTTTACGAATTTGTT GCAAACAAGACCTTGGAATATCATCTTTTCAAGGAAACAGTCTTCTTGACATGGGGTCACAGAAAGACCATCGCTTGGGGCTTGGCTTCAGCATTGCTTT ACTTACACGAAGAACGTGAGCAATCTGTTCTACATTGTGATATCAAATTAGACAATATCTTGCTGGATTCAAATTTCAGTCCCAAACTCTGTGATTTTGG CCTGGCAAGACCTGTGGAACATGAGCAAGAATCAGGTTATCCTACTGTTTTGACTGGGGCGCCAGGGTACCTGGCACCTGAGTGTAAGAAAAGTGGGAAG GCTTCGAAGGAATCGGATATTTACAGCTTTGGCGTGGTGGTTTTGCAAATGGCTTGTGGAAAGCCAGCTGTGGAACAATTTCAAGAAAACGGTACGAAAT TTGAGCTCAAGCTGGTGGATTGGGTCTTGGAGAAAATTGAAGGAGGAGAAAATGTTTCTGCTGTTGCTGATCCACGTTTAGGCCTAAGTTATGATGAGAA GGAGATGGAACAATTGATTGTTGTTGGGCTTTCTTGTGCTAATCCAAACCCATATGATCGCCCTTCAATTTGGGAGGTCATCAATATGTTAAAATGCTGA
AA sequence Show only first row Show all	>Potri.016G031300.1 pacid=42809078 polypeptide=Potri.016G031300.1.p locus=Potri.016G031300 ID=Potri.016G031300.1.v4.1 annot-version=v4.1 MDGNCTNPRKFSYQTLACATNHFSEKDKLGEGATGSVFKGFLRELSCSVAVKRILFGSKYGMESYLPEVKVLTKLKHENLVNLVGWSCNMKELLIVYEFV ANKTLEYHLFKETVFLTWGHRKTIAWGLASALLYLHEEREQSVLHCDIKLDNILLDSNFSPKLCDFGLARPVEHEQESGYPTVLTGAPGYLAPECKKSGK ASKESDIYSFGVVVLQMACGKPAVEQFQENGTKFELKLVDWVLEKIEGGENVSAVADPRLGLSYDEKEMEQLIVVGLSCANPNPYDRPSIWEVINMLKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65600			Concanavalin A-like lectin pro...		Potri.016G031300 [exp]	0	1	Pt-LEC.3
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	12.00	0.8305
AT1G58420			Uncharacterised conserved prot...		Potri.014G006300 [exp]	12.96	0.8097
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	13.85	0.8241
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.009G141600 [exp]	20.29	0.8199
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	20.61	0.8186
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	31.81	0.7914
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Potri.001G234600 [exp]	34.98	0.7939
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.007G066300 [exp]	36.60	0.7915
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.016G009700 [exp]	39.98	0.7474
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.004G220100 [exp]	41.37	0.7802

Compare expression of checked genes

Potri.016G031300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.