Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68620 160 / 2e-46 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 135 / 1e-36 ATCXE17 carboxyesterase 17 (.1) AT5G06570 129 / 1e-34 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G47480 127 / 5e-34 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 124 / 1e-32 ATCXE20 carboxyesterase 20 (.1) AT5G27320 123 / 2e-32 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 122 / 6e-32 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 120 / 2e-31 ATCXE13 carboxyesterase 13 (.1) AT3G48690 120 / 2e-31 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 120 / 3e-31 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192650 [exp] 356 / 8e-123 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.001G032400 [exp] 356 / 8e-123 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 342 / 3e-117 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 189 / 1e-57 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 171 / 2e-50 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G118400 [exp] 171 / 3e-50 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G127600 [exp] 168 / 3e-49 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.006G198800 [exp] 166 / 2e-48 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G113700 [exp] 164 / 1e-47 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024087 [exp] 355 / 3e-122 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10041632 [exp] 317 / 3e-107 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Lus10036168 [exp] 179 / 7e-54 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 170 / 4e-50 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 166 / 1e-48 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 162 / 3e-44 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017587 [exp] 151 / 8e-43 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10033548 [exp] 147 / 2e-41 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10015988 [exp] 145 / 9e-41 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10021743 [exp] 142 / 1e-39 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF10340 [poplar] [flax] Say1_Mug180 Steryl acetyl hydrolase
Representative CDS sequence Show only first row Show all	>Potri.016G031500.1 pacid=42810124 polypeptide=Potri.016G031500.1.p locus=Potri.016G031500 ID=Potri.016G031500.1.v4.1 annot-version=v4.1 ATGGCTTCCAACAAGAAAATTGTTGATGAAGTTCCTGGTTGGATTCGAGTTTTCGAGGATGGAACTGTGGACCGAACTTGGACGGGTGCACCAGAGATGG AGCCCTTGTTGAAGCCAGTCTCACCCCACGAAGAATTCATAAATGGGGTGGCTGTTCGTGACCAAATTATCGATTCAAAAACAGGCCTTGCAGTCCGAAT TTATGTCCCAGAAATGAAAAGCAATGTCCAAACCAAAGCTAAGATACCATTGATCCTTCATCTTCACGGCGGCGGCTATTGCATATGCCAACCTGACTGG AGCTTATACTACCACTTCTGTACACGACTGGTGAGCTCGGTTCAAGCTGTTTTGGTCTCCGTCTACTTTAGGCTGGCACCCGAACATCGGCTCCCAGTTG CCGTCGAGGATTCTTATGCTGCGTTGCTCTGGCTCCGTGCCAATGCTCGCGGCGAATTATCTGATCAATGGCTCACGAGCTATGCTGATTTTAATCGAGT GTTTCTGGTCGGGGATAGCTCCGGTGGGAATTTAGTGCATCAAGTAGCAGCTCAAGCAGGGTTCGATGATATTGAGCCTTTAAAGCTAAGAGGCGGGATA GCCATACAACCTGGCTTCATATCGGACAAGCCGAGTAAGTCATATTTGGAAATACCTGAAAATCCATTATCAACAAGAGAAATGATGAAAAAGTTCACGT CATTGGCCGTGCCTATTGGTAGCACTGGGGAGCACCCAATTGTGTGGCCAATAGGTCCTCAAGCACCACCACTAACCACTCTGAAACTTCCACCTATGCT CGTTGTGGTGGCGGAGATGGATTTGCTTCGAGACTATGAATTGGAATATTGCGAGGAGATGAAGAAAGCTGGCAAAGAAGTAGAGGTTTTTATGAATTAT GGAATGAGTCACAGCTTCCAGTTTAATAAGCTTGCCATTGACATGGATCCAGAGATAGCTACCCAAACTAATAAGATGATTGAGGTGATTGTAAGTTTTA TCAATAGGAGCAGCTGA
AA sequence Show only first row Show all	>Potri.016G031500.1 pacid=42810124 polypeptide=Potri.016G031500.1.p locus=Potri.016G031500 ID=Potri.016G031500.1.v4.1 annot-version=v4.1 MASNKKIVDEVPGWIRVFEDGTVDRTWTGAPEMEPLLKPVSPHEEFINGVAVRDQIIDSKTGLAVRIYVPEMKSNVQTKAKIPLILHLHGGGYCICQPDW SLYYHFCTRLVSSVQAVLVSVYFRLAPEHRLPVAVEDSYAALLWLRANARGELSDQWLTSYADFNRVFLVGDSSGGNLVHQVAAQAGFDDIEPLKLRGGI AIQPGFISDKPSKSYLEIPENPLSTREMMKKFTSLAVPIGSTGEHPIVWPIGPQAPPLTTLKLPPMLVVVAEMDLLRDYELEYCEEMKKAGKEVEVFMNY GMSHSFQFNKLAIDMDPEIATQTNKMIEVIVSFINRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.016G031500 [exp]	0	1
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140700 [exp]	1.00	0.9854
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G118900 [exp]	2.00	0.9757
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167800 [exp]	2.44	0.9710
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117000 [exp]	14.14	0.9672
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Potri.003G129100 [exp]	16.61	0.9656	Pt-CYP86.7
					Potri.011G006500 [exp]	17.74	0.9646
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Potri.010G178800 [exp]	17.74	0.9015
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150500 [exp]	18.24	0.9640	SP1.3
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Potri.017G085200 [exp]	18.76	0.9644
AT2G15580			RING/U-box superfamily protein...		Potri.006G190300 [exp]	20.39	0.9487

Compare expression of checked genes

Potri.016G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.