Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56630 402 / 2e-138 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 391 / 4e-134 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G48520 241 / 2e-75 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT5G63450 231 / 2e-71 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G01900 228 / 1e-70 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT2G27690 225 / 2e-69 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT1G63710 213 / 1e-64 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G23190 212 / 5e-64 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 205 / 8e-62 Cytochrome P450 superfamily protein (.1) AT1G01600 201 / 1e-59 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G031700 [exp] 578 / 0 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 463 / 1e-162 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.005G220700 [exp] 270 / 1e-86 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220900 [exp] 268 / 8e-86 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 265 / 1e-84 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 257 / 1e-81 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.012G096800 [exp] 257 / 1e-81 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.001G331100 [exp] 256 / 3e-81 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Potri.001G277301 [exp] 238 / 3e-77 AT3G56630 209 / 4e-64 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 261 / 4e-83 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 253 / 6e-80 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 251 / 4e-79 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10012531 [exp] 242 / 1e-75 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10041562 [exp] 238 / 4e-74 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10033852 [exp] 225 / 3e-69 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 219 / 1e-66 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10010193 [exp] 214 / 7e-65 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 211 / 2e-63 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10018217 [exp] 207 / 2e-62 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.016G031800.2 pacid=42810223 polypeptide=Potri.016G031800.2.p locus=Potri.016G031800 ID=Potri.016G031800.2.v4.1 annot-version=v4.1 ATGGAAGTCTTGTCACTTCAAATTCTGCTGATACTTCTCTTTATTTCCCTCTTTTTTTACCTCTACGCTCTCTTCCCTTCAAAGAAGAAACCTGCCAACA AGGGCTTCAAGTTTTATCCCATAGTAGGGGCCTTACCGGAATTCTTAAGAAATCGACACCGGTTCCTTGAGTGGACTACAGAAACACTCAGTCATTGCCC CACCAACACTGCTGTCTTTCACCGTCCTGGCAAAGTCCATGGCATCATCACTGCAAACCCTTTGAATGTTGAGTATATTCTCAAGACGAACTTTGAGAAC TACCCAAAAGGAGACCGGTTTATCAACCTTCTTGAAGACTTCCTCGGTAGAGGAATCTTTAACTCGGATGGAGAGCTATGGAGAGTCCAGAGGAAAACTG CTAGCTATGAGTTCAATACAAAGTCACTCCGAAATTTTGTCATGGAGAATGTTGAGGTTGAAATTTCGACAAGGTTAGTTCCAATTCTTGCCAAAGCTTC GAAAACAAAGCAGGTGTTGGATTTGCAAGACATATTGGAAAGGTTTGCATTTGATAATATATGTAAAGTGGCTTTTAATGTTGATCCTGCTTGTCTTGGC GGCGATGGGACCAGTGGTGGTGAGTTTATGCGTGCGTTTGAAGATGCTGCCACACTTAGCTCTGGGAGATTCATGTATGTTCTTCCAGTTTTTTGGAAAA TTAACAGATTTTTCAATGTTGGGACAGAGAAAACATTGAGAGAATCAGTTAAAATTGTCCATGAATTTGCGGATGAGATGATACGGTCTAGAATGGAGCT AAAAACTGAAAAGAATGATGAAGATTTTCTATCACGGTTTATAGGGAAGGATGAAAATTCAACTGAATTTCTCAGAGATATTGTCATAAGCTTTATTCTG GCAGGCCGAGACACAACATCCTCTGCTTTGAGTTGGTTCTTTTGGCTACTATCATTAAACCCGGATGTAGAAGGGAACATATTAAAGGAGCTTGAAACGA TTCGGTCAAGCAACGGAAAAAATCCTCGGTGA
AA sequence Show only first row Show all	>Potri.016G031800.2 pacid=42810223 polypeptide=Potri.016G031800.2.p locus=Potri.016G031800 ID=Potri.016G031800.2.v4.1 annot-version=v4.1 MEVLSLQILLILLFISLFFYLYALFPSKKKPANKGFKFYPIVGALPEFLRNRHRFLEWTTETLSHCPTNTAVFHRPGKVHGIITANPLNVEYILKTNFEN YPKGDRFINLLEDFLGRGIFNSDGELWRVQRKTASYEFNTKSLRNFVMENVEVEISTRLVPILAKASKTKQVLDLQDILERFAFDNICKVAFNVDPACLG GDGTSGGEFMRAFEDAATLSSGRFMYVLPVFWKINRFFNVGTEKTLRESVKIVHEFADEMIRSRMELKTEKNDEDFLSRFIGKDENSTEFLRDIVISFIL AGRDTTSSALSWFFWLLSLNPDVEGNILKELETIRSSNGKNPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031800 [exp]	0	1
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031700 [exp]	1.00	0.9747	Pt-CYP94.6
AT4G16580			Protein phosphatase 2C family ...		Potri.005G125700 [exp]	11.40	0.9266
AT4G18810			NAD(P)-binding Rossmann-fold s...		Potri.004G061200 [exp]	12.32	0.9518
AT5G64460			Phosphoglycerate mutase family...		Potri.009G080300 [exp]	13.56	0.9102
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Potri.012G124500 [exp]	14.07	0.9157
AT5G01015			unknown protein		Potri.006G113700 [exp]	17.66	0.8975
AT2G35260			unknown protein		Potri.001G143400 [exp]	18.97	0.9353
AT3G46610			Pentatricopeptide repeat (PPR-...		Potri.017G070800 [exp]	18.97	0.9488
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.002G055500 [exp]	20.78	0.9437
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.010G189900 [exp]	21.63	0.9302

Compare expression of checked genes

Potri.016G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.