Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NITR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 590 / 0 Major facilitator superfamily protein (.1) AT5G01180 431 / 3e-145 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 414 / 2e-138 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 409 / 1e-136 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G69870 408 / 2e-135 NRT1.7 nitrate transporter 1.7 (.1) AT1G62200 407 / 2e-135 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 363 / 5e-119 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G18880 356 / 1e-115 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G46050 345 / 1e-111 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT3G54450 344 / 2e-111 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G033900 [exp] 971 / 0 AT1G68570 607 / 0.0 Major facilitator superfamily protein (.1) Potri.006G034000 [exp] 784 / 0 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 592 / 0 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 426 / 8e-143 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 412 / 9e-138 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 411 / 3e-137 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 402 / 1e-133 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 401 / 1e-133 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 400 / 3e-133 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017817 [exp] 739 / 0 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 661 / 0 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 589 / 0 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 414 / 2e-138 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 410 / 2e-136 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 409 / 2e-134 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 403 / 5e-134 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 397 / 1e-131 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10011055 [exp] 396 / 3e-131 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 395 / 7e-131 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.016G032000.1 pacid=42809032 polypeptide=Potri.016G032000.1.p locus=Potri.016G032000 ID=Potri.016G032000.1.v4.1 annot-version=v4.1 ATGGAGTTTCAGGACAACAACAAATCTCATGAAGCTGAGAAGCCGGAGGAGATGAAGATCATGGAATATGACAAGAGGAAAAAAAAACTTGGAGGCATGA AGGCAATTCCATTCATCCTTGTAACTGAAGTATGTGACAGATTTTCTACCATTGGTTTTCATGCCAACATGATCACATACCTTACTCAGCAGCTGAACTT GCCTCTTGTAAAGGCCTCTAATATAGTCTCCAACTTCAACGGAACTGCCAGCTTAACACCCTTGATCGGTGCTTTGATTGCCGACTCATTTGCTGGCCGA TTCTGGACCATCATCGTTGGTTCCATCATCTATGAACTGGGATTGATTAGCATCACCACAACAGCACTACTGAAATCACTGCATCCTCCACCTTGTCCAT CACTAGTGGACTGCAAAGAGGCTTCAAGTTTCCAACTAAGCACCCTCTACTTGTCTCTACTCCTCTTAGCTATTGGCTTGGGTGGCACCAGGCCTTGTGT CATGACCTATGCTGCAGACCAATTGGACATGAGCAAATCAGGTGTCGAGTCTCGAAGCTGGAACTTTTTCAATTGGTACTACTTTAGCTTGGGATTAGCA AGATTAGCTGCAGTGACTATAGTGGTCTACATACAAGATAATGTGAGCTGGGGCTGGGGTCTTGGAATACCAACTATTGCCATGGCTGTAGCTTTCATGG TCTTTCTATCCGGTTCTCCACTTTATAAGAAAGTGAAACCAGGAGGAAGCCCATTGGTCAGAGTAATTCAAGTGATTGTTGCTGCTATAAGGAAGAGAAA AGCTGTGGCGCCAGAAGATCCAAGTCTCTTGTACCAAAACCAAGAACTTGATGCTGCTATATCTGTCCATGGAAGGCTTTTACACACCACTCAGTTCAAG TGGCTTGATAAAGCAGCAGTAGAGAAGTATGGTGAAGCAACAGCTTCCAGTACACCAAATCTGTGGAAGCTAGCTACCGTGCATCGAGTAGAGGAGCTAA AATCCTTTCTCAGATTGCTTCCAGTTTGGGCAGCAGGGATTTTACTTGTCACTGCAAATTCACATAGTGGCAGCTTCAATACACAACAGGCTCGCACCAT GGATCGTCGTCTGTCGAATTCCTTCCAAATTCCACCTGCTAGTATGTCCTTCTTTGGCATCATGACCGTGATCATAGGGCTTGTTCTTTACGAACGCCTC TTCGTGCCCTTTGTGCGTAGATTCACAAGAAATTCTGCAGGCATCACATACCTACAAAGAATGGGCATAGGCCTACTCTTCAACATTCTCTTTTCCGTTG TTGCTGCATTGGTTGAGAAAAAGAGAAGAACAGTGGCAGAAAATCATAACTTAGTGGATAACCCTAAAGCCACCGTTCCTATAAGTGTATTCTGGCTTGT TCCTCAGCTTTCCCTCCATGGAATGTCAGAAGTCTTCATGGCTGTTGGACAGTTAGAATTTCTATATGATCAATCACCAGAAAGCATGAGAAGTATTGCC TTGGGATTGTTTTGGATAGCAAGTTCTGTTGGAGATTACTTGGGCACATTGATGGTGTCACTGATTCATGAGTACACAGGACACAAGAACAATTGGTTAC CTGACAGGAACCTGAACATAGGAAAGTTGGACTATTATTATTGGCTTGTAACTGGTATCCAAGCTATAAATTTTGTGTATTTTGTGATTTGTGCTTGGTG TTACACTTACAAGCCCTTGGAAGAGGTCATGGAGGAAGATTCAGTTTAG
AA sequence Show only first row Show all	>Potri.016G032000.1 pacid=42809032 polypeptide=Potri.016G032000.1.p locus=Potri.016G032000 ID=Potri.016G032000.1.v4.1 annot-version=v4.1 MEFQDNNKSHEAEKPEEMKIMEYDKRKKKLGGMKAIPFILVTEVCDRFSTIGFHANMITYLTQQLNLPLVKASNIVSNFNGTASLTPLIGALIADSFAGR FWTIIVGSIIYELGLISITTTALLKSLHPPPCPSLVDCKEASSFQLSTLYLSLLLLAIGLGGTRPCVMTYAADQLDMSKSGVESRSWNFFNWYYFSLGLA RLAAVTIVVYIQDNVSWGWGLGIPTIAMAVAFMVFLSGSPLYKKVKPGGSPLVRVIQVIVAAIRKRKAVAPEDPSLLYQNQELDAAISVHGRLLHTTQFK WLDKAAVEKYGEATASSTPNLWKLATVHRVEELKSFLRLLPVWAAGILLVTANSHSGSFNTQQARTMDRRLSNSFQIPPASMSFFGIMTVIIGLVLYERL FVPFVRRFTRNSAGITYLQRMGIGLLFNILFSVVAALVEKKRRTVAENHNLVDNPKATVPISVFWLVPQLSLHGMSEVFMAVGQLEFLYDQSPESMRSIA LGLFWIASSVGDYLGTLMVSLIHEYTGHKNNWLPDRNLNIGKLDYYYWLVTGIQAINFVYFVICAWCYTYKPLEEVMEEDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68570			Major facilitator superfamily ...		Potri.016G032000 [exp]	0	1	Pt-NITR1.1
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	7.74	0.8593
AT5G01015			unknown protein		Potri.006G113700 [exp]	8.48	0.8529
AT1G21680			DPP6 N-terminal domain-like pr...		Potri.002G079900 [exp]	16.00	0.8516
AT3G26770			NAD(P)-binding Rossmann-fold s...		Potri.004G200100 [exp]	24.28	0.8602	Pt-CTS2.8
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.016G008500 [exp]	84.42	0.8345

Compare expression of checked genes

Potri.016G032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.