Plant FIBer expression Database

Potri.016G032100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56640 1265 / 0 SEC15A exocyst complex component sec15A (.1)
AT4G02350 788 / 0 SEC15B exocyst complex component sec15B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G034200
[exp]
1484 / 0 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1)
Potri.002G203200
[exp]
845 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1)
Potri.014G127400
[exp]
837 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038993
[exp]
1305 / 0 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1)
Lus10010439
[exp]
1296 / 0 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1)
Lus10027288
[exp]
1289 / 0 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1)
Lus10009856
[exp]
493 / 5e-166 AT4G02350 689 / 0.0 exocyst complex component sec15B (.1)
Lus10010296
[exp]
392 / 2e-130 AT4G02350 556 / 0.0 exocyst complex component sec15B (.1)
Lus10010295
[exp]
337 / 3e-108 AT4G02350 517 / 5e-179 exocyst complex component sec15B (.1)
Lus10009857
[exp]
81 / 3e-18 AT4G02350 119 / 9e-33 exocyst complex component sec15B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF04091 Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence
>Potri.016G032100.2 pacid=42810053 polypeptide=Potri.016G032100.2.p locus=Potri.016G032100 ID=Potri.016G032100.2.v4.1 annot-version=v4.1
ATGGATGCGAAACTTAAGAGGAGAACTTTTGTAGAGAATGGGGATGGAGGAGAGGACTTAGTGCTTGCGACTTTGATTGGAAATGGGGAGGATTTGGGTC
CGATTGTCAGGCATGCATTTGAAATGGGGCGGCCTGAATCGCTGTTTCATCAGCTCAAGTCTGTTGTGAGGAAGAAGGAAGTTGAAATTGAGGAGCTGTG
CAAAAGCCATTACGAGGAATTCATTCTTGCAGTTGATGAACTTCGTGGTGTATTGGTTGATGCTGAAGAGTTAAAAAGTGAGCTTGCAAGTGAGAATTTT
AGATTGCAAGAAGTTGGGAGTGGTCTTTTGATCAAACTCGAGGAACTCCTTGAATCTTATTCGATTAAGAAGAATGTGGCCGAAGCTATTAAAATGTCAA
AGGTATGCATTCAAGTTCTGGAACTCTGTGTCAAGTGTAACAACCACATGTTGGAAAGCCAGTTTTACCCAGCATTGAAAACAGTGGATCTGATTGAGAG
GACTTACTTGCACAACATCCCTATGAAGGCACTTAAAATGGCCATAGAGAAGACAATTCCAGTAATAAAATTGCATATCGAGAAGAAAGTTACTAGTCAG
TTTAATGAATGGCTAGTTCAAATAAGGAGTTCTGCTAAAGATATTGGACAAACAGCAATAGGTCATACTTCATCAGCCCGTCAAAGAGATGAGGAAATGC
TGGAACGTCAGAGAAAAGCTGAGGAACAGAACATTCCGGGGTTAGGAGATTTTGTATATACTCTGGACGTTGCGGAAACCGATGAAGATTCTGTTGTGAA
GTTTGATCTTACTCCTGTTTTTCGGGTTTATCATATTCATGCTTGCCTGGGAATCCAAGAGCAGTTCCGTGAATACTACTATAAGAATAGGTTATTGCAA
CTCAATTCAGATTTGCAAATCTCTACTACTCAACCATTTGTTGAATATTATCAAACATATTTGGCTCAAATTGCTGGTTACTTCATAGTGGAGGATCGGG
TTTTAAGAACTGCTAGGGATCTTCTGTCAGCAAATCAGGTTGAGACAATGTGGGAAACGACTGTAGCTAAAATGACATCTGTTCTGGATGAACAGTTTTC
CCATATGGATTCTGCGACTCATCTTCTGCTGGTGAAGGATTATGTCACTCTTCTCGGAGCAACTCTTAGACAATATGGGTATGAAGTTGGCCAAATTCTT
GAGGTTCTTGATAGTAGTCGAGATAAGTATCATGAGCTTCTTTTGGGAGAATGTCGGGAGCAAATTGTTAATGCTCTTGGAAATGACACCTATGAGCAGA
TGGTAATGAAAAAGGATACTGATTATGAGAATAATGTCCTCTCATTTCATCTTCAGACCTCCGATATAATGCCTGCTTTCCCATATATTGCACCATTCTC
CTCCATGGTACCTGATACTTGCCGCATCGTTAGATCTTTCATCAAAGGTTCTGTTGATTACTTGTCATATGGGGTGCATACTAATATTTATGACGTTGTG
AGAAAATATTTGGACAAGCTCTTGATTGATGTGTTAAATGAAGTTATACTTAGCACAATCCATGGTGGTGCAGTTGGTGTGTCTCAAGCCATGCAGATTG
CCGCCAACATATCTGTTCTTGAGAGAGCTTGTGATTTTTTTCTTCGACATGCAGCCCAACTATGTGGAATCCCTATCCGATCAGTTGAGAGGCCTCAAGC
TAGTTTGACTGCCAAGGTGGTCCTAAAAACTTCAAGGGATGAAGCTTATATTGCTCTGCTGGATCTGGTGAACAACAAGTTAGATGGATTGATGGCACTT
ACTGAAAATATCAATTGGACCTCAGAGGAAACGCCACAAAATGGGAATGACTATATTAATGAGGTGGTTATTTACCTGGACACCATTTTGTCAACAGCAC
AACAAATTCTGCCCTTGGATGCCCTACACAAAGTTGGGAGTGGTGCCCTTGAGCACATTTCCAATTCCATTGTTGGGGCATTTCTTAGTGATAGTGTAAA
GAGGTTCAATGCTAATGCAGTCCTATCTCTCAACATTGATTTGAAGTTGTTAGAGGATTTTGCTGACGACAGATTTCATAGCACTGGGCTGAGTGAAATA
CACAAGGAAGGTAGCTTTAGAGGCTGCTTGATAGAAGCACGACAGTTGATTAACCTTTTGTCAAGCAGCCAGCCAGAGAACTTCATGAATCCTGTGATAA
GGCAGAAAAACTATGATGCTTTGGATTATAAGAAGGTGGCCAGCATCTGTGAGAAATTCAAGGATTCCCCTGATGGAATCTTTGGTAGCCTTTCAACCAG
AAATACGAAGCAAAGTGCACGGAAGAAATCAATGGACATGCTGAAGAAAAGATTGAAGGACTTCAATTGA
AA sequence
>Potri.016G032100.2 pacid=42810053 polypeptide=Potri.016G032100.2.p locus=Potri.016G032100 ID=Potri.016G032100.2.v4.1 annot-version=v4.1
MDAKLKRRTFVENGDGGEDLVLATLIGNGEDLGPIVRHAFEMGRPESLFHQLKSVVRKKEVEIEELCKSHYEEFILAVDELRGVLVDAEELKSELASENF
RLQEVGSGLLIKLEELLESYSIKKNVAEAIKMSKVCIQVLELCVKCNNHMLESQFYPALKTVDLIERTYLHNIPMKALKMAIEKTIPVIKLHIEKKVTSQ
FNEWLVQIRSSAKDIGQTAIGHTSSARQRDEEMLERQRKAEEQNIPGLGDFVYTLDVAETDEDSVVKFDLTPVFRVYHIHACLGIQEQFREYYYKNRLLQ
LNSDLQISTTQPFVEYYQTYLAQIAGYFIVEDRVLRTARDLLSANQVETMWETTVAKMTSVLDEQFSHMDSATHLLLVKDYVTLLGATLRQYGYEVGQIL
EVLDSSRDKYHELLLGECREQIVNALGNDTYEQMVMKKDTDYENNVLSFHLQTSDIMPAFPYIAPFSSMVPDTCRIVRSFIKGSVDYLSYGVHTNIYDVV
RKYLDKLLIDVLNEVILSTIHGGAVGVSQAMQIAANISVLERACDFFLRHAAQLCGIPIRSVERPQASLTAKVVLKTSRDEAYIALLDLVNNKLDGLMAL
TENINWTSEETPQNGNDYINEVVIYLDTILSTAQQILPLDALHKVGSGALEHISNSIVGAFLSDSVKRFNANAVLSLNIDLKLLEDFADDRFHSTGLSEI
HKEGSFRGCLIEARQLINLLSSSQPENFMNPVIRQKNYDALDYKKVASICEKFKDSPDGIFGSLSTRNTKQSARKKSMDMLKKRLKDFN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56640 SEC15A exocyst complex component sec1... Potri.016G032100
[exp]
0 1
AT5G18410 ATSRA1, KLK, PI... PIROGI 121, PIROGI, KLUNKER, t... Potri.019G025200
[exp]
1.41 0.8934
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Potri.011G061300
[exp]
3.74 0.8708 Pt-RAB11.12
AT3G44200 IBO1, ATNEK6 "NIMA \(never in mitosis, gene... Potri.009G020100
[exp]
5.47 0.8330
AT5G19630 alpha/beta-Hydrolases superfam... Potri.003G212400
[exp]
10.39 0.8220
AT1G76070 unknown protein Potri.005G245600
[exp]
10.90 0.8277
AT1G27440 ATGUT1, IRX10, ... Exostosin family protein (.1) Potri.003G162000
[exp]
11.61 0.8236
Potri.018G139200
[exp]
11.87 0.8517
AT2G41710 AP2_ERF Integrase-type DNA-binding sup... Potri.006G049700
[exp]
12.40 0.8204
AT4G36660 Protein of unknown function (D... Potri.014G181600
[exp]
15.90 0.8094
AT1G31300 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.012G118100
[exp]
17.49 0.8126

Potri.016G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.