Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40950 498 / 6e-167 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 345 / 2e-109 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT3G10800 335 / 1e-104 bZIP BZIP28 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G11260 47 / 7e-06 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G17609 44 / 3e-05 bZIP HYH HY5-homolog (.1.2.3.4) AT1G06850 44 / 0.0002 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G034500 [exp] 979 / 0 AT2G40950 475 / 1e-157 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.018G029500 [exp] 51 / 3e-07 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G251800 [exp] 50 / 1e-06 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G257900 [exp] 45 / 8e-05 AT1G42990 101 / 1e-24 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Potri.010G004200 [exp] 44 / 0.0001 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4) Potri.013G091400 [exp] 43 / 0.0005 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 43 / 0.0008 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G101200 [exp] 42 / 0.001 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038995 [exp] 458 / 2e-151 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027290 [exp] 447 / 3e-147 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10010440 [exp] 433 / 8e-142 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012104 [exp] 409 / 8e-132 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 49 / 2e-06 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002900 [exp] 49 / 2e-06 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10040069 [exp] 44 / 0.0003 AT1G42990 84 / 4e-18 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.016G032400.1 pacid=42809642 polypeptide=Potri.016G032400.1.p locus=Potri.016G032400 ID=Potri.016G032400.1.v4.1 annot-version=v4.1 ATGGAGGAGGAATTCAACTCCCAACTCCCAACTCCTCCTCTCGATCCTCTCTTTTTCAATCAAAATTCTGACCAAAACGACAACTTAAACGTTCCAGATC TGTCCTCTGATTTCGAGGACATGTCCGATTTTGACATCACCTTTGATGATCTCACTGACCTTTACTTCCCTTCCGAGAACGAGCAGTTCCTTATCCCTGA CAACAATGCGGTCAGCCCGGACATGGGTCGATCAGATAACCCGGGTTTTGAAACCGGCTCTCTTGAAGGTTGTTTAGGGGTTTTTGATTCTAATCCCGTG AATTTGGAGTCGCCGGAGTCTGGTGGATCTGGGATATGTGGTGATCAGGGCGGCTTGGAGGTTGATAAGTATCTTAATCCTTCACCGTCGGAGGCTGGGA GTTGTGATTCGGGTGGGTCTGATAGTCGAAGCTCTGATTTGGGTCCTGCTTCGTCTCACGGGTCTGGGAATTCTGGGTCGGGTGTGTTGAATGCGGGTTC GCCGGAATCAGGTACGAATGGCAATCCCTGTAATTATGTTGTTGATCAGAAACTTGTGAAAACTGAAACTGACAGTGCGAGAATCTTGAAAAATGATAAA ATTGCGTTGACTAAGAGGAAAAAAGAAATGGGTGATGGAGAAAATGGAGACGTTATGCGGAACTTTAAGTCCCGGAAAGCTGAGGGTGAAGATGTGAGTG TTAATGTTGGTGGGGGTGTGGTTTCGAGTGAAGAAGAGGAGAAGAGGAGGGCGAGGTTGGTGAGGAATCGGGAGAGTGCGCATTTGTCTAGGCAAAGGAA GAAGCATTATGTTGAGGAATTAGAAGATAAGGTGAGAGCAATGCATTCGACTATAGCTGATTTGAATGGTAAAGTTTCCTATTTTATGGCTGAAAATGCT ACTTTGCGACAACAATTGAATGGGAACAGTGCGTGCCCGCCACCAATGTATGCACCCATGGCGCCTTATCCATGGGTGCCGTGTGCGCCTTATGTTGTTA AGCCTCAAGGGTCTCAAGTGCCATTGGTTCCGATTCCTAGGTTGAAACCGCAACAAGCTGTTCCTATGGCAAAGACTAAGAAGGTTGAGAGTAAGAAAGG CGAGGGTAAAACTAAGAAGGTTGCTAGTGTTAGTTTGATTGGTTTGGTATTTTTTATTTTGTTGTTTGGTGGGCTGGCTCCTATGGTGGATGTTAAATTT GGTGGAGTTAGAGAGAGTGGAATTAGTGGGTTTGGTTTTGGTAGTGAGAGGTTTTTGGATCAGCATAAGGGAAGGGTTTTGATTGTTGATGGGCACTCAA ATGGGTCGCATGAAAATGTCGGTGTTGGGTTGTCGAATGATAAAATACAGTGTTTGAGAGGTCGTACAGGGTGTCCAGAGCATGATTCTGCAAATAAAGG GGCTGCTGAGCATTTACCTGGATCAGATGAATTTGGTCAGTTTGGTAATGCTAGTGAACAGCTCGTTGCATCTTTATATGTGCCAAGAAACGATAAGCTT GTGAAGATAGATGGAAACTTGATAATTCATTCTATTCTGGCAAGCGAGAGAGCTATGGCCTCTCATGAAAGTCCTGAAGTGAATATCACTAAGCAGACAG CACTGGCTATTCCTGATGTTGGTAACAATAGAGGGAGGCATTCTCATGTGTACCGAACTCATGCTGAGCGACAGAAGGCCCTTGCTTCTGGATCTGCCGA CACTTCAAAGGACAATTTGAAGTCATCTGCAGCTAAAGGCAAACTGCAGCAGTGGTTCCGTGAAGGCCTTGCAGGGCCATTGTTGAGTTCGGGTATGTGC ACTGAAGTGTTCCAGTTTGATGTCTCACCAACACCAGGAGCCATAGTTCCTGCTTCCTCAGTTGCCAATGTGACAGCAGAGCACCAGAAGAACAATTCTA CTCGCCTCAACAAGGGGAGGAATAGAAGGATCCTCCGTGGCCTTCCAATTCCTCTCGCGGGATCGGATCTCAATATCACTGGAGAACACGTGGGAAGGAA AACTCATAAGGAGAGCTTTCAGGGTAATAAATCGGTTTCTCCAATGGTTGTCTCTGTCCTTGTTGATCCTAGAGAGGCTGGCGACAGTGATGTTGATGGC GTAATCACCCCAAAGTCACTTTCTCGGATTTTTGTAGTCGTGCTCGTAGACAGCATAAAATATGTAACTTATTCGTGCGTGCTTCCTAGCATTGGTCCTC ACCTAGTTACAACTTGA
AA sequence Show only first row Show all	>Potri.016G032400.1 pacid=42809642 polypeptide=Potri.016G032400.1.p locus=Potri.016G032400 ID=Potri.016G032400.1.v4.1 annot-version=v4.1 MEEEFNSQLPTPPLDPLFFNQNSDQNDNLNVPDLSSDFEDMSDFDITFDDLTDLYFPSENEQFLIPDNNAVSPDMGRSDNPGFETGSLEGCLGVFDSNPV NLESPESGGSGICGDQGGLEVDKYLNPSPSEAGSCDSGGSDSRSSDLGPASSHGSGNSGSGVLNAGSPESGTNGNPCNYVVDQKLVKTETDSARILKNDK IALTKRKKEMGDGENGDVMRNFKSRKAEGEDVSVNVGGGVVSSEEEEKRRARLVRNRESAHLSRQRKKHYVEELEDKVRAMHSTIADLNGKVSYFMAENA TLRQQLNGNSACPPPMYAPMAPYPWVPCAPYVVKPQGSQVPLVPIPRLKPQQAVPMAKTKKVESKKGEGKTKKVASVSLIGLVFFILLFGGLAPMVDVKF GGVRESGISGFGFGSERFLDQHKGRVLIVDGHSNGSHENVGVGLSNDKIQCLRGRTGCPEHDSANKGAAEHLPGSDEFGQFGNASEQLVASLYVPRNDKL VKIDGNLIIHSILASERAMASHESPEVNITKQTALAIPDVGNNRGRHSHVYRTHAERQKALASGSADTSKDNLKSSAAKGKLQQWFREGLAGPLLSSGMC TEVFQFDVSPTPGAIVPASSVANVTAEHQKNNSTRLNKGRNRRILRGLPIPLAGSDLNITGEHVGRKTHKESFQGNKSVSPMVVSVLVDPREAGDSDVDG VITPKSLSRIFVVVLVDSIKYVTYSCVLPSIGPHLVTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.016G032400 [exp]	0	1
AT4G02040			unknown protein		Potri.008G198000 [exp]	10.95	0.7525
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.011G149300 [exp]	14.83	0.6909
AT4G16600			Nucleotide-diphospho-sugar tra...		Potri.001G158000 [exp]	17.34	0.6693
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.005G031466 [exp]	20.09	0.7348
AT1G27200			Domain of unknown function (DU...		Potri.010G039000 [exp]	25.92	0.7307
AT4G17490	AP2_ERF	ERF-6-6, ATERF6	ethylene responsive element bi...		Potri.001G154200 [exp]	29.66	0.7147	Pt-ERF5.2,ERF4
AT5G05140			Transcription elongation facto...		Potri.016G033300 [exp]	29.66	0.6900
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.009G034800 [exp]	30.39	0.7228
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Potri.019G124000 [exp]	32.29	0.6069
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.012G145800 [exp]	37.62	0.7296

Compare expression of checked genes

Potri.016G032400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.