Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06150 451 / 8e-157 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 435 / 7e-151 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT4G37490 423 / 4e-146 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT2G26760 354 / 2e-119 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT1G20610 274 / 1e-87 CYCB2;3 Cyclin B2;3 (.1) AT1G76310 260 / 3e-82 CYCB2;4 CYCLIN B2;4 (.1) AT2G17620 252 / 3e-79 CYCB2;1 Cyclin B2;1 (.1) AT4G35620 247 / 2e-77 CYCB2;2 Cyclin B2;2 (.1) AT1G16330 245 / 2e-74 CYCB3;1 cyclin b3;1 (.1) AT1G34460 226 / 7e-69 CYCB1;5, CYC3, CYCB1;4 CYCLIN 3, CYCLIN B1;5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G035200 [exp] 662 / 0 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.009G066600 [exp] 405 / 4e-139 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.001G272000 [exp] 400 / 2e-137 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.002G010000 [exp] 271 / 1e-86 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 267 / 3e-85 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 266 / 1e-84 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 263 / 1e-83 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.010G173200 [exp] 239 / 5e-72 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 225 / 1e-66 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036080 [exp] 376 / 8e-128 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 375 / 6e-127 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10039033 [exp] 352 / 8e-118 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10003800 [exp] 337 / 5e-112 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10010483 [exp] 283 / 2e-91 AT5G06150 322 / 8e-107 cyclin B 1;2, Cyclin family protein (.1) Lus10012261 [exp] 266 / 1e-83 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10016015 [exp] 256 / 8e-81 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 253 / 1e-79 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 251 / 8e-79 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10027331 [exp] 216 / 3e-66 AT5G06150 262 / 2e-84 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G033000.1 pacid=42810613 polypeptide=Potri.016G033000.1.p locus=Potri.016G033000 ID=Potri.016G033000.1.v4.1 annot-version=v4.1 ATGGCTTCAAGGGTTCAGCAACAACAAGCAATCAGAGGTGAAGCAGTTGTAGGTGTAAACAAGAATGTGAAGAAAATTGCAGCAGCGGCTGAAGTAAAAA ACCGCCGGGTTCTTGGCGATATTGGTAATCTTGTTACAGTTCGAGGAATAGAGGGCAAGCAGCAGCCTAATCGCCCCGTCACAAGGAGTTTCGGTGCTCA ACTGCTTGCCAATGCTCAAGCTGCGGCAGCTGCAGAGAACAACAAGAAACAAGTATATGTCAAAGCGGAAAAAGTGCCTGCTGCTGGTGTTGATGGAGTG GCCGCAGAGGCTAGAAAAGTTGCAGTGAGAAAGCCAGCTCAGAAGAAAGTTACTGTGAAACCAAAGCCTGAAGAGGTGACTGAGATAAACCCTGATACTG AAGAGAAGCCAGGGAACAAGAAAAAGGAAGGAGAAGGATCTACAAAGAAGAACAAGCCAACTCTTTCTTCTGTCCTCACTGCTAGAAGCAAGGCTGCTTG TGGTGTTGCAAACAAACCAAAGGGGCAGGTTATTGATATTGATGCAGCAGACGTTAACAATGATTTGGCTGGGGTGGAATATGTCGAGGACATCTACAAG TTCTACAAGCTAGTTGAGAATGAGAGCCGGCCCAATGACTACATGGACAGGCAGCCCGAGATTAATGAGAAAATGAGAGCCATTCTTGTGGATTGGTTGA TTGACGTGCAGCACAAGTTTGAGCTCTCACCCGAAACTCTTTATCTCACAATCAATATCATTGATAGATTCCTTTCTGTGAAGACTGTTCCCAGAAAGGA ATTGCAGCTTGTGGGCATGAGTGCCACACTTATGGCCTCAAAGTATGAAGAGATATGGGCTCCTGAGGTCAATGACTTGGTGTGCATTTCAGACAGAGCT TACACTCATGAACAGATTCTAGTTATGGAGAAGACTATATTGGCAAACCTGGAATGGACACTGACAGTGCCTACACACTATGTTTTCCTTGCTCGCTTCA TTAAGGCATCAATTCCTGAGAAGGGAATGGAGAACATGGTCTATTTTCTAGCTGAGTTGGGCTTGATGCATTATGACACAGTCATGTTTTGTCCATCAAT GGTTGCTGCCTCAGCAGTATATGTGGCTCGATGCACTCTAAATAAAACCCCTTCCTGGACTGACACCCTTAAGAAGCACACTGGTTTCTCAGAACCACAA CTTAAGGATTGTGCTGGATTGCTGGTGTATTTCCATTCGAAAGCCGCGGAACACAGACTTCAGTCTGTGTACAGGAAGTACTCAAAGCCTGAGCGAGGAG CAGTTGCACTGCTTCCACCAGCCAAAAGTCTGTTGCCTGGTGGTTTGAGTTAA
AA sequence Show only first row Show all	>Potri.016G033000.1 pacid=42810613 polypeptide=Potri.016G033000.1.p locus=Potri.016G033000 ID=Potri.016G033000.1.v4.1 annot-version=v4.1 MASRVQQQQAIRGEAVVGVNKNVKKIAAAAEVKNRRVLGDIGNLVTVRGIEGKQQPNRPVTRSFGAQLLANAQAAAAAENNKKQVYVKAEKVPAAGVDGV AAEARKVAVRKPAQKKVTVKPKPEEVTEINPDTEEKPGNKKKEGEGSTKKNKPTLSSVLTARSKAACGVANKPKGQVIDIDAADVNNDLAGVEYVEDIYK FYKLVENESRPNDYMDRQPEINEKMRAILVDWLIDVQHKFELSPETLYLTINIIDRFLSVKTVPRKELQLVGMSATLMASKYEEIWAPEVNDLVCISDRA YTHEQILVMEKTILANLEWTLTVPTHYVFLARFIKASIPEKGMENMVYFLAELGLMHYDTVMFCPSMVAASAVYVARCTLNKTPSWTDTLKKHTGFSEPQ LKDCAGLLVYFHSKAAEHRLQSVYRKYSKPERGAVALLPPAKSLLPGGLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	0	1
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.002G010000 [exp]	1.00	0.9822
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.001G272000 [exp]	1.73	0.9787
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	2.00	0.9785
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	3.16	0.9762
AT3G03130			unknown protein		Potri.013G081600 [exp]	3.74	0.9740
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.005G142200 [exp]	4.24	0.9722
AT2G17620		CYCB2;1	Cyclin B2;1 (.1)		Potri.005G100000 [exp]	4.24	0.9751	Pt-CYCMS1.1
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	6.32	0.9720
AT5G37010			unknown protein		Potri.012G145200 [exp]	7.34	0.9658
					Potri.018G114600 [exp]	7.48	0.9693

Compare expression of checked genes

Potri.016G033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.