Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05140 415 / 3e-142 Transcription elongation factor (TFIIS) family protein (.1) AT3G10820 233 / 3e-70 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2) AT5G09850 72 / 1e-13 Transcription elongation factor (TFIIS) family protein (.1) AT2G38560 49 / 5e-06 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G035500 [exp] 823 / 0 AT5G05140 309 / 6e-101 Transcription elongation factor (TFIIS) family protein (.1) Potri.019G003900 [exp] 59 / 4e-09 AT5G09850 322 / 7e-109 Transcription elongation factor (TFIIS) family protein (.1) Potri.001G307600 [exp] 57 / 1e-08 AT5G09850 336 / 4e-114 Transcription elongation factor (TFIIS) family protein (.1) Potri.014G144000 [exp] 54 / 3e-08 ND / Potri.001G031200 [exp] 47 / 6e-06 ND / Potri.016G138100 [exp] 45 / 9e-05 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G109300 [exp] 43 / 0.0004 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.012G077700 [exp] 42 / 0.001 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039000 [exp] 548 / 0 AT5G05140 382 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Lus10027295 [exp] 540 / 0 AT5G05140 369 / 1e-124 Transcription elongation factor (TFIIS) family protein (.1) Lus10002088 [exp] 58 / 8e-09 AT5G09850 276 / 9e-91 Transcription elongation factor (TFIIS) family protein (.1) Lus10003853 [exp] 58 / 8e-09 AT5G09850 268 / 4e-88 Transcription elongation factor (TFIIS) family protein (.1) Lus10034247 [exp] 48 / 1e-05 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029017 [exp] 45 / 1e-05 AT2G38560 70 / 1e-14 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.016G033300.2 pacid=42809173 polypeptide=Potri.016G033300.2.p locus=Potri.016G033300 ID=Potri.016G033300.2.v4.1 annot-version=v4.1 ATGAAATCTGTGTCACTTGATTACTGGAGGGATTATTTTAGGACAGCAAGTTCTGATATTTTTGGTATCATTGATCATGCAATCTTGGTTGCAGCATCTG ATTGTCCAAAAGAGTTTAAATTGCGTAGAGATCGGATTGCAGAACGTTTGTTTTCTTGTAGATTGATAAAGTGTTCGGGTTGTAACCAGGTAGAGCTGGC GGTTCCGGGTCATGATGAAGATGAGAGGGATGATAGAGGTTGCTGTAGCAAAAGAAGGGATGGTGATAATTCTGGTAGTGATGATGATGAAGAAGAAGTT GATATAGATATTGATGATGGCGGGTTTGAGTACGAGGGAGGTGGGAGTAAAGAGAGCAAGGTGAATAGTAGTAATAGGGATAATGATTTTGATAATGGAG AAGTGAATGTGAATGATCAGTTGGTTAGTAATTTTAGTTTTGGAGAAGCTGAAGCTTTAACTGATGAGATTGAGGAGGTGTCTCAGACTGTTGATGAGGT TTTGAGGATCAAAGACATTCTTTATAACAGCCAAGATGAGTCTGATTCTGTGTTGCTTGAATCATTGAGGAAGCTTAGATTGATGGCTTTGACTGTGGAT ACTCTAAAGGCAACTGAGATTGGAAAGGCTGTCAATGGGCTCCGGAAGCATGGATCAAAGCAGATTCGACATCTTGCACGGACTTTAATAGAAGACTGGA AAGTTTTGGTAGACGAGTGGTACAGTGCTGCAAATGTTATACGAGGTAATGAAGGTACTCCTGATTCTGTAAATCCTTCTGTTGTTGATGAAGAAGAAGG GCTTCCTTCTCCTCCTTTGGATGAAGGAGCTTTCTTTGCCACTCAACCTACTTCAATGGAGCTCTCACAATTCTTTGATGGAATGGATGATGATGGAAAT CCTCGAAACAATGGGGAATTCATCAAGAACCATGTAAGTAGAAGGAGACCTTCAGCAGAGAATCAAAATATTTCAAAACAGAAACAGCAGACTCCTAAGG GAGCAAATATGCCTTCTAAGGACAACGAGAGTCAACAGATGAGGAAGCAAGAAGATGTTGTCAAGGCAAGTAAGCCTTCAAATGCCAATTCTGGGCCTGG GAGACCTCTAAAGCAAAATGTTGAGCAGAAGATGAATCAGGAAACAGTGTTAATTCGAAAGACAGATAAGGTTACCAGCCAGAGAAAGCCCCCAACTGGT CAGCAAGATAAACTTAAGAGTTCAGATGAAGTTGCTGTCCAGATGAAACTTGAAGCCACAAAAAGGAAACTCCAGGAGCGGTACCAACAAGCCGAGAAAG CCAAGAGGCAAAGAACAATACAGGTAATGGAGCTGCATGATCTCCCTAAGCAGGGACATGTTCAGAAAAACCAACCCATGCGACTAGGGAACCACAACCG GCACTGGGCGCATGGAAGGCGGTAA
AA sequence Show only first row Show all	>Potri.016G033300.2 pacid=42809173 polypeptide=Potri.016G033300.2.p locus=Potri.016G033300 ID=Potri.016G033300.2.v4.1 annot-version=v4.1 MKSVSLDYWRDYFRTASSDIFGIIDHAILVAASDCPKEFKLRRDRIAERLFSCRLIKCSGCNQVELAVPGHDEDERDDRGCCSKRRDGDNSGSDDDEEEV DIDIDDGGFEYEGGGSKESKVNSSNRDNDFDNGEVNVNDQLVSNFSFGEAEALTDEIEEVSQTVDEVLRIKDILYNSQDESDSVLLESLRKLRLMALTVD TLKATEIGKAVNGLRKHGSKQIRHLARTLIEDWKVLVDEWYSAANVIRGNEGTPDSVNPSVVDEEEGLPSPPLDEGAFFATQPTSMELSQFFDGMDDDGN PRNNGEFIKNHVSRRRPSAENQNISKQKQQTPKGANMPSKDNESQQMRKQEDVVKASKPSNANSGPGRPLKQNVEQKMNQETVLIRKTDKVTSQRKPPTG QQDKLKSSDEVAVQMKLEATKRKLQERYQQAEKAKRQRTIQVMELHDLPKQGHVQKNQPMRLGNHNRHWAHGRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05140			Transcription elongation facto...		Potri.016G033300 [exp]	0	1
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Potri.006G066800 [exp]	13.41	0.6966
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.010G187900 [exp]	15.68	0.7701
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014346 [exp]	16.49	0.7129
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.004G095600 [exp]	17.49	0.7543
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.005G031466 [exp]	19.13	0.7528
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.016G032400 [exp]	29.66	0.6900
AT5G36930			Disease resistance protein (TI...		Potri.006G270000 [exp]	32.00	0.7470
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G005900 [exp]	33.82	0.6879
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	34.49	0.7397
AT5G13590			unknown protein		Potri.010G213800 [exp]	34.64	0.7080

Compare expression of checked genes

Potri.016G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.